View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9757_low_10 (Length: 343)

Name: NF9757_low_10
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9757_low_10
NF9757_low_10
[»] chr6 (13 HSPs)
chr6 (1-327)||(28502836-28503162)
chr6 (1-327)||(29815241-29815567)
chr6 (44-128)||(28502781-28502864)
chr6 (44-128)||(29815186-29815269)
chr6 (126-263)||(29717369-29717506)
chr6 (126-193)||(33735436-33735503)
chr6 (126-194)||(2231092-2231160)
chr6 (74-113)||(29717294-29717333)
chr6 (139-189)||(28486658-28486708)
chr6 (3-45)||(29717322-29717364)
chr6 (139-189)||(29799071-29799121)
chr6 (124-185)||(7932405-7932466)
chr6 (124-168)||(26373101-26373145)
[»] chr8 (4 HSPs)
chr8 (172-248)||(12593204-12593280)
chr8 (125-185)||(5510088-5510148)
chr8 (126-194)||(11813896-11813964)
chr8 (126-188)||(27743148-27743212)
[»] chr7 (2 HSPs)
chr7 (124-194)||(48957852-48957922)
chr7 (124-185)||(32888937-32888998)
[»] chr5 (4 HSPs)
chr5 (126-186)||(41015004-41015064)
chr5 (126-188)||(18551489-18551551)
chr5 (127-168)||(21047069-21047110)
chr5 (126-187)||(39159736-39159797)
[»] chr2 (3 HSPs)
chr2 (124-187)||(28044713-28044776)
chr2 (126-168)||(18569437-18569479)
chr2 (126-187)||(4204952-4205012)
[»] chr1 (3 HSPs)
chr1 (124-187)||(19484792-19484855)
chr1 (129-179)||(29928228-29928278)
chr1 (127-188)||(392325-392386)
[»] scaffold0007 (1 HSPs)
scaffold0007 (175-248)||(45152-45225)
[»] chr3 (1 HSPs)
chr3 (126-187)||(1442306-1442366)
[»] chr4 (1 HSPs)
chr4 (124-168)||(13298547-13298591)


Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 28502836 - 28503162
Alignment:
Q  1 tggcagtttgttcaaagttcactacactgcagtgccatagcattaaactttaactacatatggcgagcttcaatgaagtcaaacacggatctcagaaaat 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28502836 tggcagtttgttcaaagttcactacactacagtgccatagcattaaactttgactacatttggcgagcttcaatgaagtcaaacacggatctcagaaaat 28502935  T
Q  101 agcagtttgttcagagttcattacactatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaattctactacggcatag 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28502936 agcagtttgttcaaagttcattacactatttgacaacactttttactaaatcgcatatcactgcacaaaagcagtttgttaaaattctactacggcatag 28503035  T
Q  201 tgccgctatatgcactacttgacaaatctgacccacttatacacaaacccaaacacacatacaacttgtaatttgtagcaccaatacttctaattgaagg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28503036 tgccgctatatgcactacttgacaaatctgacccacttatacacaaacccaaacacacatacaacttgtaatttgtagcaccaatacttctaattgaagg 28503135  T
Q  301 tgtgtccggtgtccgacaaatatgatt 327  Q
    |||||||||||||||||||||||||||    
T  28503136 tgtgtccggtgtccgacaaatatgatt 28503162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 29815241 - 29815567
Alignment:
Q  1 tggcagtttgttcaaagttcactacactgcagtgccatagcattaaactttaactacatatggcgagcttcaatgaagtcaaacacggatctcagaaaat 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29815241 tggcagtttgttcaaagttcactacactacagtgccatagcattaaactttgactacatttggcgagcttcaatgaagtcaaacacggatctcagaaaat 29815340  T
Q  101 agcagtttgttcagagttcattacactatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaattctactacggcatag 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29815341 agcagtttgttcaaagttcattacactatttgacaacactttttactaaatcgcatatcactgcacaaaagcagtttgttaaaattctactacggcatag 29815440  T
Q  201 tgccgctatatgcactacttgacaaatctgacccacttatacacaaacccaaacacacatacaacttgtaatttgtagcaccaatacttctaattgaagg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29815441 tgccgctatatgcactacttgacaaatctgacccacttatacacaaacccaaacacacatacaacttgtaatttgtagcaccaatacttctaattgaagg 29815540  T
Q  301 tgtgtccggtgtccgacaaatatgatt 327  Q
    |||||||||||||||||||||||||||    
T  29815541 tgtgtccggtgtccgacaaatatgatt 29815567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 28502781 - 28502864
Alignment:
Q  44 taaactttaactacatatggcgagcttcaatgaagtcaaacacggatctcagaaaatagcagtttgttcagagttcattacacta 128  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| |||||||    
T  28502781 taaactttaactacatatggtgagcttcaatgaagtcaaacacggatctcag-aaatggcagtttgttcaaagttcactacacta 28502864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 29815186 - 29815269
Alignment:
Q  44 taaactttaactacatatggcgagcttcaatgaagtcaaacacggatctcagaaaatagcagtttgttcagagttcattacacta 128  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| |||||||    
T  29815186 taaactttaactacatatggtgagcttcaatgaagtcaaacacggatctcag-aaatggcagtttgttcaaagttcactacacta 29815269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 263
Target Start/End: Original strand, 29717369 - 29717506
Alignment:
Q  126 ctatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaattctactacggcatagtgccgctatatgcactacttgacaa 225  Q
    |||||||||||||||||  |||||||| |||||| | |||||| | || ||||||||||||||||| ||| || ||||  ||||||||||||||||| |     
T  29717369 ctatttgacaacactttgaactaaatcacatatcgcggaacaatatcaatttgttaaaattctacttcggtatggtgcttctatatgcactacttgaaac 29717468  T
Q  226 atctgacccacttatacacaaacccaaacacacataca 263  Q
      ||||| || ||| |||||||| || |||||||||||    
T  29717469 cactgacacatttacacacaaactcatacacacataca 29717506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 33735436 - 33735503
Alignment:
Q  126 ctatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaattctactac 193  Q
    ||||||||||||| ||| |||||||| ||||||||| |||||||||  ||||||||||||||| ||||    
T  33735436 ctatttgacaacattttgtactaaatagcatatcacggaacaaaagtggtttgttaaaattctgctac 33735503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 2231092 - 2231160
Alignment:
Q  126 ctatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaattctactacg 194  Q
    ||||| ||||||| ||| |||||||| ||||||| | | ||||||||||||||| |||||||| |||||    
T  2231092 ctattggacaacattttgtactaaatagcatatcgcaggacaaaagcagtttgtcaaaattctgctacg 2231160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 29717294 - 29717333
Alignment:
Q  74 tgaagtcaaacacggatctcagaaaatagcagtttgttca 113  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  29717294 tgaagtcaatcacggatctcagaaaaaagcagtttgttca 29717333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 28486658 - 28486708
Alignment:
Q  139 ctttttactaaatcgcatatcactgaacaaaagcagtttgttaaaattcta 189  Q
    |||| ||||||||| |||||||| |||||| ||||||||||||| ||||||    
T  28486658 ctttgtactaaatctcatatcacagaacaatagcagtttgttaatattcta 28486708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 29717322 - 29717364
Alignment:
Q  3 gcagtttgttcaaagttcactacactgcagtgccatagcatta 45  Q
    |||||||||||||| ||| ||||||| ||||||||||||||||    
T  29717322 gcagtttgttcaaatttcgctacactacagtgccatagcatta 29717364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 29799071 - 29799121
Alignment:
Q  139 ctttttactaaatcgcatatcactgaacaaaagcagtttgttaaaattcta 189  Q
    |||| ||||||||| |||||||| |||||| ||||||||||||| ||||||    
T  29799071 ctttgtactaaatctcatatcacagaacaatagcagtttgttaatattcta 29799121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 7932405 - 7932466
Alignment:
Q  124 cactatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaat 185  Q
    ||||||||||| | ||||| |||||||||||||||||  |||||| ||  ||||||||||||    
T  7932405 cactatttgactaaactttgtactaaatcgcatatcaaggaacaatagttgtttgttaaaat 7932466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 26373145 - 26373101
Alignment:
Q  124 cactatttgacaacactttttactaaatcgcatatcactgaacaa 168  Q
    ||||||||||||||||||| |||||||| || |||||| ||||||    
T  26373145 cactatttgacaacactttgtactaaatagcgtatcacagaacaa 26373101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 12593280 - 12593204
Alignment:
Q  172 cagtttgttaaaattctactacggcatagtgccgctatatgcactacttgacaaatctgacccacttatacacaaac 248  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||| |||||| | ||||||    
T  12593280 cagtttgttaaaattctactacggtatagtgccgctatatgcattatttgacaaatctgacacacttacagacaaac 12593204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 5510148 - 5510088
Alignment:
Q  125 actatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaat 185  Q
    |||||||||||||||||| ||||||||||| ||| |  ||||||||||| |||||| ||||    
T  5510148 actatttgacaacactttgtactaaatcgcgtatgatagaacaaaagcaatttgttgaaat 5510088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 11813964 - 11813896
Alignment:
Q  126 ctatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaattctactacg 194  Q
    ||||||||||| ||||| ||||||||||  |||||| || ||| || |||||||||||||||| |||||    
T  11813964 ctatttgacaaaactttgtactaaatcgtgtatcacagatcaatagtagtttgttaaaattctgctacg 11813896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 27743212 - 27743148
Alignment:
Q  126 ctatttgacaacactttttact-aaatcgcatat-cactgaacaaaagcagtttgttaaaattct 188  Q
    ||||||||||||||||| |||| ||||||||||| | | |||||| |||| ||||||||||||||    
T  27743212 ctatttgacaacactttgtacttaaatcgcatattcgcggaacaatagcaatttgttaaaattct 27743148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 48957922 - 48957852
Alignment:
Q  124 cactatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaattctactacg 194  Q
    ||||||||||||||||||| ||||||||||  |||| |||||||| | ||||| ||||||||||| |||||    
T  48957922 cactatttgacaacactttgtactaaatcgagtatctctgaacaataacagttggttaaaattctgctacg 48957852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 32888998 - 32888937
Alignment:
Q  124 cactatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaat 185  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||||||| || ||||| ||||    
T  32888998 cactatttgacaatactttgtactaaatagcatatcactgaacaaaagtagcttgttcaaat 32888937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 41015004 - 41015064
Alignment:
Q  126 ctatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaatt 186  Q
    |||| |||||||||||| |||||||| ||||||||| |||||| ||||||||||| |||||    
T  41015004 ctatatgacaacactttgtactaaatagcatatcacggaacaatagcagtttgttcaaatt 41015064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 18551489 - 18551551
Alignment:
Q  126 ctatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaattct 188  Q
    |||| |||||||||||| |||||||| ||||||| |  ||||| ||| |||||||||||||||    
T  18551489 ctatatgacaacactttgtactaaattgcatatctcgaaacaatagctgtttgttaaaattct 18551551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 21047069 - 21047110
Alignment:
Q  127 tatttgacaacactttttactaaatcgcatatcactgaacaa 168  Q
    |||||||||||| |||||||||||| ||||||||| ||||||    
T  21047069 tatttgacaacattttttactaaatagcatatcacggaacaa 21047110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 39159736 - 39159797
Alignment:
Q  126 ctatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaattc 187  Q
    ||||||| |||| |||| |||||||| ||||||||| |||||| ||  ||||||||||||||    
T  39159736 ctatttgtcaacgctttgtactaaattgcatatcacagaacaatagtggtttgttaaaattc 39159797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 28044713 - 28044776
Alignment:
Q  124 cactatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaattc 187  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||| || ||||| || ||||||    
T  28044713 cactatttgacaacactttgtactaaatcgcatatcacaaaacaatagtagtttattcaaattc 28044776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 18569479 - 18569437
Alignment:
Q  126 ctatttgacaacactttttactaaatcgcatatcactgaacaa 168  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||    
T  18569479 ctatttgacaacactttatactaaatagcatatcacagaacaa 18569437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 4204952 - 4205012
Alignment:
Q  126 ctatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaattc 187  Q
    ||||||||||||| |||||||||||| ||||||||| |||||| ||| |||| || ||||||    
T  4204952 ctatttgacaaca-tttttactaaatagcatatcacggaacaatagcggttttttcaaattc 4205012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 19484792 - 19484855
Alignment:
Q  124 cactatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaattc 187  Q
    |||| |||| ||||||||  |||||||||||||||| | |||||| ||||||||||||||||||    
T  19484792 cactgtttgtcaacacttcgtactaaatcgcatatcccagaacaatagcagtttgttaaaattc 19484855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 29928278 - 29928228
Alignment:
Q  129 tttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgt 179  Q
    |||| ||||||||| |||||||||||||||||| |||||| | ||||||||    
T  29928278 tttggcaacactttatactaaatcgcatatcacggaacaatatcagtttgt 29928228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 392325 - 392386
Alignment:
Q  127 tatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaattct 188  Q
    |||||||||||||||| ||||| || |  |||| | |||||| |||||||||||||||||||    
T  392325 tatttgacaacactttgtactatattgtgtatcgcggaacaatagcagtttgttaaaattct 392386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 45225 - 45152
Alignment:
Q  175 tttgttaaaattctactacggcatagtgccgctatatgcactacttgacaaatctgacccacttatacacaaac 248  Q
    |||||| ||||| ||||| ||||||||||| |||||| | ||| ||||||| ||| || |||||| ||||||||    
T  45225 tttgtttaaattttactatggcatagtgcccctatatccgctatttgacaactctaacacacttacacacaaac 45152  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 1442366 - 1442306
Alignment:
Q  126 ctatttgacaacactttttactaaatcgcatatcactgaacaaaagcagtttgttaaaattc 187  Q
    ||||||||||||| |||  ||||||| ||||||| | |||||||||| ||||||||||||||    
T  1442366 ctatttgacaaca-tttcaactaaatagcatatctcagaacaaaagctgtttgttaaaattc 1442306  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 13298591 - 13298547
Alignment:
Q  124 cactatttgacaacactttttactaaatcgcatatcactgaacaa 168  Q
    |||||||||||| |||||| |||||||| ||||||||| ||||||    
T  13298591 cactatttgacagcactttgtactaaatagcatatcacagaacaa 13298547  T

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