View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9757_low_11 (Length: 337)
Name: NF9757_low_11
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9757_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 28328967 - 28329068
Alignment:
| Q |
6 |
gtttggtgttgtgtcaatcccagcaaaaaataaatcctgccaaaatataatttccaaattaatttaaaatttaacctatatatcggtaaaaagtggggaa |
105 |
Q |
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| T |
28328967 |
gtttgatgttgtgtcaatcccagcaaaaaataaatcctgccaaaatataatttccaaattaatttaaaatttaacctatatatcggtaaaaagtgtggaa |
28329066 |
T |
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| Q |
106 |
ta |
107 |
Q |
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|| |
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| T |
28329067 |
ta |
28329068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 28329310 - 28329361
Alignment:
| Q |
271 |
tcctgttattaagtcgatcaacttccctaaaaaataattaagtcgatcaact |
322 |
Q |
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| T |
28329310 |
tcctgttattaagtcgatcaacttccctcaaaaataattaagtcgatcaact |
28329361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 28320127 - 28320180
Alignment:
| Q |
12 |
tgttgtgtcaatcccagcaaaaaataaatcctgccaaaatataatttccaaatt |
65 |
Q |
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| T |
28320127 |
tgttgtgtcaatcccagcaacaaataagtcctaacaaaacatgatttccaaatt |
28320180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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