View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9757_low_13 (Length: 322)

Name: NF9757_low_13
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9757_low_13
NF9757_low_13
[»] chr1 (11 HSPs)
chr1 (167-309)||(42300795-42300937)
chr1 (171-310)||(52794050-52794189)
chr1 (1-94)||(26734597-26734690)
chr1 (1-94)||(42300630-42300723)
chr1 (1-94)||(52793881-52793974)
chr1 (3-87)||(42301413-42301497)
chr1 (10-94)||(28253423-28253507)
chr1 (12-94)||(27524457-27524539)
chr1 (1-43)||(9626647-9626689)
chr1 (11-94)||(8322708-8322791)
chr1 (46-94)||(8323227-8323275)
[»] chr6 (17 HSPs)
chr6 (167-310)||(12600235-12600378)
chr6 (167-310)||(20772637-20772780)
chr6 (1-94)||(843317-843410)
chr6 (1-94)||(12600074-12600166)
chr6 (167-262)||(843154-843244)
chr6 (1-94)||(19401910-19402003)
chr6 (168-239)||(19597591-19597662)
chr6 (1-87)||(842363-842449)
chr6 (1-94)||(7800027-7800120)
chr6 (241-308)||(7799221-7799287)
chr6 (168-239)||(19581195-19581266)
chr6 (241-304)||(19398314-19398376)
chr6 (12-94)||(19597766-19597848)
chr6 (168-235)||(7799842-7799909)
chr6 (11-94)||(11065441-11065524)
chr6 (168-235)||(19401753-19401820)
chr6 (1-30)||(20773294-20773323)
[»] chr5 (6 HSPs)
chr5 (167-310)||(13374106-13374249)
chr5 (1-94)||(9671137-9671230)
chr5 (1-94)||(13373944-13374037)
chr5 (243-310)||(9671278-9671344)
chr5 (1-69)||(9672162-9672230)
chr5 (15-75)||(13375144-13375204)
[»] chr2 (16 HSPs)
chr2 (167-310)||(10344722-10344865)
chr2 (167-310)||(44820111-44820254)
chr2 (167-310)||(42930012-42930150)
chr2 (12-94)||(44819957-44820039)
chr2 (1-94)||(10344937-10345029)
chr2 (1-94)||(40128716-40128809)
chr2 (1-94)||(42930222-42930313)
chr2 (1-94)||(43516575-43516668)
chr2 (1-77)||(42929110-42929186)
chr2 (168-239)||(42827691-42827762)
chr2 (1-87)||(10344165-10344251)
chr2 (12-94)||(42827505-42827587)
chr2 (1-77)||(44820734-44820810)
chr2 (168-222)||(40128557-40128611)
chr2 (168-222)||(43516773-43516827)
chr2 (46-94)||(22059952-22060000)
[»] scaffold0060 (3 HSPs)
scaffold0060 (167-310)||(12827-12965)
scaffold0060 (1-94)||(13037-13130)
scaffold0060 (1-77)||(11956-12032)
[»] chr4 (23 HSPs)
chr4 (171-310)||(23703462-23703596)
chr4 (171-310)||(35785509-35785643)
chr4 (167-310)||(7108031-7108169)
chr4 (167-310)||(38158202-38158345)
chr4 (167-310)||(55018939-55019082)
chr4 (1-94)||(4907258-4907351)
chr4 (1-94)||(29756441-29756534)
chr4 (1-94)||(4933127-4933220)
chr4 (1-94)||(35785340-35785433)
chr4 (1-94)||(7108243-7108336)
chr4 (2-94)||(55019158-55019250)
chr4 (167-262)||(4932968-4933058)
chr4 (1-94)||(38158419-38158512)
chr4 (167-262)||(4907099-4907189)
chr4 (167-262)||(29756606-29756696)
chr4 (1-87)||(4906306-4906392)
chr4 (1-87)||(4932175-4932261)
chr4 (1-77)||(29757413-29757489)
chr4 (1-77)||(22674329-22674405)
chr4 (1-77)||(23702579-23702653)
chr4 (1-38)||(23703707-23703744)
chr4 (1-77)||(35786483-35786559)
chr4 (56-94)||(23703669-23703707)
[»] chr8 (10 HSPs)
chr8 (167-310)||(21143606-21143744)
chr8 (1-94)||(359110-359203)
chr8 (1-94)||(21143817-21143910)
chr8 (167-262)||(358947-359037)
chr8 (1-87)||(358155-358241)
chr8 (1-87)||(21142653-21142739)
chr8 (12-94)||(27411028-27411110)
chr8 (168-239)||(27410136-27410208)
chr8 (16-92)||(37964438-37964514)
chr8 (16-92)||(27409956-27410032)
[»] chr3 (8 HSPs)
chr3 (1-94)||(24612446-24612539)
chr3 (1-94)||(31199425-31199518)
chr3 (167-262)||(24612612-24612702)
chr3 (1-87)||(24613408-24613494)
chr3 (1-87)||(33781289-33781375)
chr3 (15-94)||(27329015-27329094)
chr3 (16-92)||(27320486-27320562)
chr3 (171-222)||(31199624-31199675)
[»] chr7 (5 HSPs)
chr7 (1-94)||(41591692-41591785)
chr7 (171-239)||(41385421-41385489)
chr7 (12-94)||(41385596-41385678)
chr7 (168-222)||(41591890-41591944)
chr7 (54-94)||(41593012-41593052)
[»] scaffold0129 (1 HSPs)
scaffold0129 (171-235)||(3886-3950)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 167 - 309
Target Start/End: Original strand, 42300795 - 42300937
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgttaag 266  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42300795 atcccataccttgcgcccttgaaccaaaactcatatccttcaacaatttattctaattccattactcaatcatattgtgtgttttgattgtaatgttaag 42300894  T
Q  267 ttgaaacattgtatgcgacttaagtttgattaatttagtgatg 309  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  42300895 ttgaaacattgtatgctacttaagtttgattaatttagtgatg 42300937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 52794050 - 52794189
Alignment:
Q  171 cataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgttaagttga 270  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  52794050 cataccttgcgcccttgaaccaaaacccatatccttcaacaatttattctaattccatcactcaatcatattgtgtgttttgattgtaatgttaagttga 52794149  T
Q  271 aacattgtatgcgacttaagtttgattaatttagtgatgt 310  Q
    ||| |||||||| ||||||||||||||| |||||||||||    
T  52794150 aacgttgtatgctacttaagtttgattagtttagtgatgt 52794189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 26734597 - 26734690
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  26734597 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacacagggatgaaatt 26734690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 42300630 - 42300723
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||| | |||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  42300630 agttggcaaagttgatgagatggaatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacacagggatgaaatt 42300723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 52793881 - 52793974
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||| | |||||||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| ||||||||||    
T  52793881 agttggcaaagttgatgagatggaatgagagatgataagttgttaaattacagggactaaaatcaaaaacgtaaattgacacaaggatgaaatt 52793974  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 42301497 - 42301413
Alignment:
Q  3 ttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacaggga 87  Q
    |||||||||||||||||||||||||||||||||| ||||||  |||  || ||||||||| ||||| ||||||||  ||||||||    
T  42301497 ttggcacatttgatgagatggcatgagagatgattagttgtgtaaagtcagggactaaaatcaaaagcgtaaattaccacaggga 42301413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 28253507 - 28253423
Alignment:
Q  10 atttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    ||||| ||||||||||||||||||||||||| ||   | || | ||||||||| |||||||||||||| ||| ||||||||||||    
T  28253507 atttgctgagatggcatgagagatgataagtagtgttagtagagggactaaaatcaaaaacgtaaatttacatagggatgaaatt 28253423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 27524457 - 27524539
Alignment:
Q  12 ttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    ||||||||||||||||||||||||||||| ||   | |||| ||||||||| |||||||  ||||| ||| ||||||||||||    
T  27524457 ttgatgagatggcatgagagatgataagtagtgttagtacagggactaaaaccaaaaacacaaatttacatagggatgaaatt 27524539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9626647 - 9626689
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgt 43  Q
    ||||||| |||||||||||||||||||||||||||| ||||||    
T  9626647 agttggctcatttgatgagatggcatgagagatgattagttgt 9626689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 8322708 - 8322791
Alignment:
Q  11 tttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    ||||||||  ||||||| |||||||| ||||    ||||||| ||||||||| |||||||| |||||  |||||||||||||||    
T  8322708 tttgatgatctggcatgcgagatgattagtttggtaaatacagggactaaaatcaaaaacgaaaattaccacagggatgaaatt 8322791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 8323275 - 8323227
Alignment:
Q  46 aaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    ||||||| ||||||||| |||||||| |||||  |||||||||||||||    
T  8323275 aaatacagggactaaaatcaaaaacgaaaattaccacagggatgaaatt 8323227  T

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Target: chr6 (Bit Score: 124; Significance: 9e-64; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 167 - 310
Target Start/End: Original strand, 12600235 - 12600378
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgttaag 266  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||    
T  12600235 atcccataccttgcgcccttgaaccaaaactcatatccttcaacaatttattctaattccatcactcaatcatattgtgtgttttgattgtaattttaag 12600334  T
Q  267 ttgaaacattgtatgcgacttaagtttgattaatttagtgatgt 310  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  12600335 ttgaaacattgtatgctacttaagtttgattaatttagtgatgt 12600378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 167 - 310
Target Start/End: Original strand, 20772637 - 20772780
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgttaag 266  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20772637 atcccataccttgagcccttgaaccaaaacccatatccttcaacaatttattctaattccattactcaatcatattgtgtgttttgattgtaatgttaag 20772736  T
Q  267 ttgaaacattgtatgcgacttaagtttgattaatttagtgatgt 310  Q
    |||||| ||| ||||| |||||||||||||||||||||||||||    
T  20772737 ttgaaatattatatgctacttaagtttgattaatttagtgatgt 20772780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 843410 - 843317
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  843410 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacacagggatgaaatt 843317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 12600074 - 12600166
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||| | |||||||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| ||||||||||    
T  12600074 agttggcaaagttgatgagatggaatgagagatgataagttgttaaa-tacatggactaaaatcaaaaacgtaaattgacacatggatgaaatt 12600166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 843244 - 843154
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgt 262  Q
    |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| |||     |||||||||||||||||||||||    
T  843244 atcccataccttgcacccttaaaccaaaacccatatccttcaacaatttattctaattccattagtca-----attgtatgttttgattgtaatgt 843154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 19402003 - 19401910
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||| |||||||||||||||||| |||||||| ||||||  ||||||| ||||||||| ||||||||||||||  |||||||||||||||    
T  19402003 agttggcatatttgatgagatggcatgtgagatgattagttgtgtaaatacagggactaaaatcaaaaacgtaaattatcacagggatgaaatt 19401910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 19597662 - 19597591
Alignment:
Q  168 tcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcat 239  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||||| | |||||||||||||||||||||||    
T  19597662 tcccataccttgctcccttgaaccaaaacccatctccttcaacaatgtcttctaattccattactcaatcat 19597591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 842363 - 842449
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacaggga 87  Q
    |||||||||||||||||||||||||| ||||||||| ||||||  ||| ||| ||||||||| ||||||||||||||  ||||||||    
T  842363 agttggcacatttgatgagatggcataagagatgattagttgtgtaaagacagggactaaaatcaaaaacgtaaattaccacaggga 842449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 7800120 - 7800027
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||| |||||||||| ||||||| |||||||| ||||||  ||||||| ||||||||| ||||||||||||||  ||||||||| |||||    
T  7800120 agttggcatatttgatgaggtggcatgcgagatgattagttgtataaatacagggactaaaatcaaaaacgtaaattaccacagggataaaatt 7800027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 7799287 - 7799221
Alignment:
Q  241 ttgtatgttttgattgtaatgttaagttgaaacattgtatgcgacttaagtttgattaatttagtgat 308  Q
    |||| ||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||    
T  7799287 ttgtgtgttttggttgtaatgtta-gttgaaacattgtatgctacttaaatttgattaatttagtgat 7799221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 19581266 - 19581195
Alignment:
Q  168 tcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcat 239  Q
    ||||||||||||  ||||||||||||||| ||| |||||||||||| | ||||||||| |||||||||||||    
T  19581266 tcccataccttgttcccttgaaccaaaacccatctccttcaacaatatcttctaattctattactcaatcat 19581195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 19398376 - 19398314
Alignment:
Q  241 ttgtatgttttgattgtaatgttaagttgaaacattgtatgcgacttaagtttgattaatttag 304  Q
    |||| ||||||| ||||||| ||| ||| ||||||||||||| |||||||||||||||||||||    
T  19398376 ttgtgtgttttggttgtaatttta-gtttaaacattgtatgctacttaagtttgattaatttag 19398314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 19597848 - 19597766
Alignment:
Q  12 ttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    ||||||||||| |||||||||||||||||||  | | |||| |||||| ||  |||||| || || |||||||||||||||||    
T  19597848 ttgatgagatgacatgagagatgataagttgggagagtacagggactagaataaaaaacatatatcgacacagggatgaaatt 19597766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 7799909 - 7799842
Alignment:
Q  168 tcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaa 235  Q
    |||||||||||||||||| |||||||||   || || ||||||||| | |||||||||||| ||||||    
T  7799909 tcccataccttgcgccctagaaccaaaaactatctctttcaacaatgtcttctaattccataactcaa 7799842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 11065524 - 11065441
Alignment:
Q  11 tttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    ||||||||  ||||||| |||||||| ||||    ||||||| ||||||||| |||||||| |||||  |||||||||||||||    
T  11065524 tttgatgatctggcatgtgagatgattagtttggtaaatacagggactaaaatcaaaaacgaaaattaccacagggatgaaatt 11065441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 19401820 - 19401753
Alignment:
Q  168 tcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaa 235  Q
    |||||||||||||||||| |||||||||   || || ||||||||| | |||||||||||| ||||||    
T  19401820 tcccataccttgcgccctagaaccaaaaactatctctttcaacaatgtcttctaattccataactcaa 19401753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 20773323 - 20773294
Alignment:
Q  1 agttggcacatttgatgagatggcatgaga 30  Q
    ||||||||||||||||||||||||||||||    
T  20773323 agttggcacatttgatgagatggcatgaga 20773294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 9e-64; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 167 - 310
Target Start/End: Original strand, 13374106 - 13374249
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgttaag 266  Q
    ||||||||||||||| |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13374106 atcccataccttgcgaccttgaaccaaaatccaaatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgttaag 13374205  T
Q  267 ttgaaacattgtatgcgacttaagtttgattaatttagtgatgt 310  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  13374206 ttgaaacattgtatgctacttaagtttgattaatttagtgatgt 13374249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 9671137 - 9671230
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9671137 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaatcaaaaacgtaaattgacacagggatgaaatt 9671230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 13373944 - 13374037
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||    
T  13373944 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaataaaaaacgtaaattgacacagggatgaaatt 13374037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 9671278 - 9671344
Alignment:
Q  243 gtatgttttgattgtaatgttaagttgaaacattgtatgcgacttaagtttgattaatttagtgatgt 310  Q
    ||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||    
T  9671278 gtatgttttgattgtaatgttaagttgaaacattg-atactacttaagtttgattaatttagtgatgt 9671344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 9672230 - 9672162
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaa 69  Q
    ||||||||||||||| |||||||||||||||||||| ||||||  ||| ||| ||||||||| ||||||    
T  9672230 agttggcacatttgacgagatggcatgagagatgattagttgtgtaaagacatggactaaaatcaaaaa 9672162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 13375204 - 13375144
Alignment:
Q  15 atgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaa 75  Q
    ||||| |||||||||||||||| ||||||  ||| ||| |||||||||  |||||||||||    
T  13375204 atgagttggcatgagagatgattagttgtgtaaagacagggactaaaataaaaaacgtaaa 13375144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 9e-64; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 167 - 310
Target Start/End: Complemental strand, 10344865 - 10344722
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgttaag 266  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  10344865 atcccataccttgcgcccttgaaccaaaacccatatccttcaacaatttattctaattctattactcaatcatattgtgtgttttgattgtaatgttaag 10344766  T
Q  267 ttgaaacattgtatgcgacttaagtttgattaatttagtgatgt 310  Q
    |||||||||| ||||| |||||||||||||||||||||||||||    
T  10344765 ttgaaacattctatgctacttaagtttgattaatttagtgatgt 10344722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 167 - 310
Target Start/End: Original strand, 44820111 - 44820254
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgttaag 266  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  44820111 atcccataccttgcgcccttgaaccaaaacccatatccttcaacaatttattctaattccattactcaatcatattgtgtgttttgattataatgttaag 44820210  T
Q  267 ttgaaacattgtatgcgacttaagtttgattaatttagtgatgt 310  Q
    |||||||||||||||| |||||||||||||||||||| ||||||    
T  44820211 ttgaaacattgtatgctacttaagtttgattaatttaatgatgt 44820254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 167 - 310
Target Start/End: Complemental strand, 42930150 - 42930012
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgttaag 266  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||     ||||||||||||||||| ||||||    
T  42930150 atcccataccttgcgcccttgaaccaaaacccatatccttcaacaatttattctaatttcattactcaatc-----gtatgttttgattgtaaagttaag 42930056  T
Q  267 ttgaaacattgtatgcgacttaagtttgattaatttagtgatgt 310  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||    
T  42930055 ttgaaacattgtatgctacttgagtatgattaatttagtgatgt 42930012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 44819957 - 44820039
Alignment:
Q  12 ttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  44819957 ttgatgagatggaatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacacagggatgaaatt 44820039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 10345029 - 10344937
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||| | |||||||||||| ||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||    
T  10345029 agttggcaaagttgatgagatggaatgagagatgataagttgttaaaatac-aggactaaaataaaaaacgtaaattgacacagggatgaaatt 10344937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 40128809 - 40128716
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||| | |||||||||||| || ||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||    
T  40128809 agttggcaaagttgatgagatggaataagagatgataagttgttaaaacacagggactaaaatcaaaaacgtaaattgacacagggatgaaatt 40128716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 42930313 - 42930222
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    |||||||||  ||||||||||||||||||||||||||||||    
T  42930313 agttggcacatttgatgagatggcatgagagatgataacttgttaaaat--tgggactaaaataaaaaacgtaaattgacacagggatgaaatt 42930222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 43516575 - 43516668
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||| | |||||||||||| || |||||||||||||||||| |||||| |||||||||  ||||||||||||||||||||||||||||||    
T  43516575 agttggcaaagttgatgagatggaataagagatgataagttgttagaatacagggactaaaataaaaaacgtaaattgacacagggatgaaatt 43516668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 42929110 - 42929186
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaatt 77  Q
    |||||||||||||||||||||||||||||||||||| ||||||  ||| ||| ||||||||| ||||||||||||||    
T  42929110 agttggcacatttgatgagatggcatgagagatgattagttgtgtaaagacagggactaaaatcaaaaacgtaaatt 42929186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 42827691 - 42827762
Alignment:
Q  168 tcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcat 239  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||||| | |||||||||||||||||||||||    
T  42827691 tcccataccttgctcccttgaaccaaaactcatctccttcaacaatgtcttctaattccattactcaatcat 42827762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 10344165 - 10344251
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacaggga 87  Q
    |||||||||||||||||||||| |||||||||| || ||||||  ||| |||  |||||||| ||||||||||||||  ||||||||    
T  10344165 agttggcacatttgatgagatgacatgagagattattagttgtgtaaagacagagactaaaatcaaaaacgtaaattaccacaggga 10344251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 42827505 - 42827587
Alignment:
Q  12 ttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||||||| ||||||||||||||||||  | | |||| |||||||||  |||||| |||||||||||||||| ||||||    
T  42827505 ttgatgagatggtatgagagatgataagttgcaagagtacagggactaaaataaaaaacataaattgacacagggaagaaatt 42827587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 44820810 - 44820734
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaatt 77  Q
    |||||||||||||||||||||||||||||||||||| ||||||  ||| ||  |||||||||  |||||| ||||||    
T  44820810 agttggcacatttgatgagatggcatgagagatgattagttgtgcaaagacggggactaaaataaaaaacataaatt 44820734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 40128611 - 40128557
Alignment:
Q  168 tcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaa 222  Q
    |||||||||||||||| || ||||||||  |||||||||||||||| | ||||||    
T  40128611 tcccataccttgcgcctttaaaccaaaatccatatccttcaacaatgtcttctaa 40128557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 43516773 - 43516827
Alignment:
Q  168 tcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaa 222  Q
    |||||||||||||||| || ||||||||  |||||||||||||||| | ||||||    
T  43516773 tcccataccttgcgcctttaaaccaaaatccatatccttcaacaatgtcttctaa 43516827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 22060000 - 22059952
Alignment:
Q  46 aaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    ||||||| ||||||||| |||||| |||||||  |||||||||||||||    
T  22060000 aaatacagggactaaaatcaaaaatgtaaattaccacagggatgaaatt 22059952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 167 - 310
Target Start/End: Complemental strand, 12965 - 12827
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgttaag 266  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||    
T  12965 atcccataccttgcgcccttgaaccaaaacccatatccttcaacaatttattctaattccattactcaatca-----tatgttttgattgtaatgttaag 12871  T
Q  267 ttgaaacattgtatgcgacttaagtttgattaatttagtgatgt 310  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  12870 ttgaaacattgtatgccacttaagtttgattaatttagtgatgt 12827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 13130 - 13037
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||    
T  13130 agttggcacatttggtgagatggcatgagagatgataagttgttaaaatatagggactaaaatcaaaaacgtaaattgacacagggatgaaatt 13037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 11956 - 12032
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaatt 77  Q
    |||||||||||||||||||||||||||||||||||| ||||||  ||| ||| ||||||||| ||||||||||||||    
T  11956 agttggcacatttgatgagatggcatgagagatgattagttgtgtaaagacagggactaaaatcaaaaacgtaaatt 12032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 171 - 310
Target Start/End: Complemental strand, 23703596 - 23703462
Alignment:
Q  171 cataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgttaagttga 270  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||    
T  23703596 cataccttgcgcccttgaaccaaaactcatatccttcaacaatttattctaattccattactcaatc-----gtatgttttgattgtaatgttaagttga 23703502  T
Q  271 aacattgtatgcgacttaagtttgattaatttagtgatgt 310  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  23703501 aacaatgtatgctacttaagtttgattaatttagtgatgt 23703462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 35785509 - 35785643
Alignment:
Q  171 cataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgttaagttga 270  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||    
T  35785509 catactttgcacccttgaaccaaaactcatatccttcaacaatttattctaattccattactcaatc-----gtatgttttgattgtaatgttaagttga 35785603  T
Q  271 aacattgtatgcgacttaagtttgattaatttagtgatgt 310  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  35785604 aacattgtatgctacttaagtttgattaatttagtgatgt 35785643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 167 - 310
Target Start/End: Complemental strand, 7108169 - 7108031
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgttaag 266  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||| |     ||||||||||||||||||||||||    
T  7108169 atcccataccctgcgccctttaaccaaaactcatatccttcaacaatttattttaattccattactcaaac-----gtatgttttgattgtaatgttaag 7108075  T
Q  267 ttgaaacattgtatgcgacttaagtttgattaatttagtgatgt 310  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  7108074 ttgaaacattgtatgcaacttaagtttgattaatttagtgatgt 7108031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 167 - 310
Target Start/End: Complemental strand, 38158345 - 38158202
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttga-ttgtaatgttaa 265  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||| |  |||||||||||||||| |||||| ||| |||||||| ||||||||||||    
T  38158345 atcccatatcttgcgcccttgaaccaaaacccatatccttcaacaatgtcatctaattccattactcgatcata-tgtgtgttttgatttgtaatgttaa 38158247  T
Q  266 gttgaaacattgtatgcgacttaagtttgattaatttagtgatgt 310  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||    
T  38158246 gttgaaaaattgtatgctacttaagtttgattaatttagtgatgt 38158202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 167 - 310
Target Start/End: Complemental strand, 55019082 - 55018939
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgatt-gtaatgttaa 265  Q
    |||||||  |||||||| |||||||||||| |||||||||||||||| |  |||||||||||||||||||||||| || |||||||||| ||||||||||    
T  55019082 atcccatttcttgcgcctttgaaccaaaacccatatccttcaacaatgtcatctaattccattactcaatcatat-gtgtgttttgatttgtaatgttaa 55018984  T
Q  266 gttgaaacattgtatgcgacttaagtttgattaatttagtgatgt 310  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  55018983 gttgaaacattgtatgctacttaagtttgattaatttagtgatgt 55018939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 4907351 - 4907258
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  4907351 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacacagggatgaaatt 4907258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 29756441 - 29756534
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  29756441 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacacagggatgaaatt 29756534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 4933220 - 4933127
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  4933220 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaatcgtaaattgacacagggatgaaatt 4933127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 35785340 - 35785433
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  35785340 agttggcacatttgatgagatggcatgagagatgataagtttttaaaatacagggactaaaatcaaaaacgtaaattgacacagggatgaaatt 35785433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 7108336 - 7108243
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||  |||||||||||||||||||    
T  7108336 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaataaaaaacgtacgttgacacagggatgaaatt 7108243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 55019250 - 55019158
Alignment:
Q  2 gttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    ||||||| | |||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  55019250 gttggcaaagttgatgagatggaatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacacagggatgaaatt 55019158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 4933058 - 4932968
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgt 262  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||    
T  4933058 atcccataccttgcacccttgaaccaaaacacttatccttcaacaatttattctaattccattactcaatc-----gtatgttttgattgtaatgt 4932968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 38158512 - 38158419
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||| | |||||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||    
T  38158512 agttggcaaagttgatgcgatggaatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacacaaggatgaaatt 38158419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 4907189 - 4907099
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgt 262  Q
    |||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||    
T  4907189 atcccataccttgcacccttgaaccaaaactcttatccttcaacaatttattctaattccattactcaatc-----gtatgttttgattgtaatgt 4907099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 262
Target Start/End: Original strand, 29756606 - 29756696
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgt 262  Q
    |||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||     ||||||||||||||||||||    
T  29756606 atcccataccttgcacccttgaaccaaaacccttatccttcaacaatttattctaatttcattactcaatc-----gtatgttttgattgtaatgt 29756696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 4906306 - 4906392
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacaggga 87  Q
    |||||||||||||||||||||||||||||||||||| ||||||  ||| ||| ||||||||| ||||||||||||||  ||||||||    
T  4906306 agttggcacatttgatgagatggcatgagagatgattagttgtgtaaagacagggactaaaatcaaaaacgtaaattaccacaggga 4906392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 4932175 - 4932261
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacaggga 87  Q
    |||||||||||||||||||||||||||||||||||| ||||||  ||| ||| ||||||||| ||||||||||||||  ||||||||    
T  4932175 agttggcacatttgatgagatggcatgagagatgattagttgtgtaaagacagggactaaaatcaaaaacgtaaattaccacaggga 4932261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 29757489 - 29757413
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaatt 77  Q
    |||||||||||||||||||||||||||||||||||| ||||||  ||| ||| ||||||||| ||||||||||||||    
T  29757489 agttggcacatttgatgagatggcatgagagatgattagttgtgtaaagacagggactaaaatcaaaaacgtaaatt 29757413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22674329 - 22674405
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaatt 77  Q
    |||||||||||||||||| ||||||||||||||||| ||||||  ||| ||| |||||||||  |||| ||||||||    
T  22674329 agttggcacatttgatgaaatggcatgagagatgattagttgtgtaaagacagggactaaaataaaaagcgtaaatt 22674405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23702579 - 23702653
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaatt 77  Q
    ||||| ||||||||||||||||||||  |||||||| ||||||  ||| ||| ||||||||| ||||||||||||||    
T  23702579 agttgacacatttgatgagatggcat--gagatgattagttgtgtaaagacagggactaaaatcaaaaacgtaaatt 23702653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23703744 - 23703707
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23703744 agttggcacatttgatgagatggcatgagagatgataa 23703707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 35786559 - 35786483
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaatt 77  Q
    |||||||||||||||||||||||||||||||||||| | || |  ||| |||  ||||||||  |||||||||||||    
T  35786559 agttggcacatttgatgagatggcatgagagatgattaattatgtaaagacagagactaaaataaaaaacgtaaatt 35786483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 23703707 - 23703669
Alignment:
Q  56 actaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  23703707 actaaaatcaaaaacgtaaattgacacagggatgaaatt 23703669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 8e-52; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 167 - 310
Target Start/End: Complemental strand, 21143744 - 21143606
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgttaag 266  Q
    |||||||||||||| |||||||||||||||  |||| |||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||    
T  21143744 atcccataccttgcacccttgaaccaaaaccaatatgcttcaacaatttattctaattccattactcaat-----tgtatgttttgattgtaatgttaag 21143650  T
Q  267 ttgaaacattgtatgcgacttaagtttgattaatttagtgatgt 310  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  21143649 ttgaaacattgtatgctacttaagtttgattaatttagtgatgt 21143606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 359203 - 359110
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  359203 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacacagggatgaaatt 359110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 21143910 - 21143817
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  21143910 agttggcacatttaatgagatggcatgagagatgataagttgttaaaatacagggactaaaatcaaaaacgtaaattgacacagggatgaaatt 21143817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 359037 - 358947
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgt 262  Q
    |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||    
T  359037 atcccataccttgcacccttaaaccaaaacccatatccttcaacaatttattctaattccattactcaatc-----gtatgttttgattgtaatgt 358947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 358155 - 358241
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacaggga 87  Q
    |||||||||||||||||||||||||||||||||||| ||||||  ||| |||  |||||||| ||||||||||||||  ||||||||    
T  358155 agttggcacatttgatgagatggcatgagagatgattagttgtgtaaagacagagactaaaatcaaaaacgtaaattaccacaggga 358241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 21142653 - 21142739
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacaggga 87  Q
    ||||| |||||||||||||||||||||||||||||| ||||||  ||| ||| ||||| |||  |||||||||||||  ||||||||    
T  21142653 agttgacacatttgatgagatggcatgagagatgattagttgtgtaaagacatggacttaaataaaaaacgtaaattaccacaggga 21142739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 27411110 - 27411028
Alignment:
Q  12 ttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||  |||||||||||||||||||| ||   ||||||||||||||||  ||||||  ||||| ||| ||||||||||||    
T  27411110 ttgatgaagtggcatgagagatgataagtagtgttaatacaaggactaaaactaaaaacacaaatttacatagggatgaaatt 27411028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 27410136 - 27410208
Alignment:
Q  168 tcccataccttgcgcccttgaaccaaaaca-catatccttcaacaatttattctaattccattactcaatcat 239  Q
    ||||||| |||||||||||||||||||| | ||| |||||||||||| | || | |||||||| |||||||||    
T  27410136 tcccatagcttgcgcccttgaaccaaaaaatcatttccttcaacaatgtcttatcattccatttctcaatcat 27410208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 37964514 - 37964438
Alignment:
Q  16 tgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaa 92  Q
    |||| ||||||||||||| |||||| ||   |||||| ||||||||| |||||||| ||||| ||| ||||||||||    
T  37964514 tgaggtggcatgagagatcataagtagtgttaatacagggactaaaaccaaaaacgaaaatttacatagggatgaaa 37964438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 27409956 - 27410032
Alignment:
Q  16 tgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaa 92  Q
    |||| ||||||||||||| |||||| ||   |||||| ||||| ||| |||||||| ||||| ||| ||||||||||    
T  27409956 tgaggtggcatgagagatcataagtagtgttaatacagggacttaaaccaaaaacgaaaatttacatagggatgaaa 27410032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 24612446 - 24612539
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||| ||||||    
T  24612446 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatatagggactaaaatcaaaaacgtaaattgacacagggacgaaatt 24612539  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 31199425 - 31199518
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||| | |||||||||||| || |||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||    
T  31199425 agttggcaaagttgatgagatggaataagagatgataagttgttagaatacagggactaaaatcaaaaacgtaaattgacacagggatgaaatt 31199518  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 167 - 262
Target Start/End: Original strand, 24612612 - 24612702
Alignment:
Q  167 atcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcatattgtatgttttgattgtaatgt 262  Q
    |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||    
T  24612612 atcccataccttgcacccttaaaccaaaacccatatccttcaacaatttattctaattccattactcaatc-----gtatgttttgattgtaatgt 24612702  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 24613494 - 24613408
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacaggga 87  Q
    |||||||||||||||||||||||||||||||||||| ||||||  ||| ||||||||||||| ||||||||||||||  ||||||||    
T  24613494 agttggcacatttgatgagatggcatgagagatgattagttgtgtaaagacaaggactaaaatcaaaaacgtaaattaccacaggga 24613408  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33781375 - 33781289
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacaggga 87  Q
    |||||||||||||||||||||||||||||||||||| ||||||  ||| |||  ||||||||  |||||||||||||  ||||||||    
T  33781375 agttggcacatttgatgagatggcatgagagatgattagttgtgtaaagacagagactaaaataaaaaacgtaaattaccacaggga 33781289  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 27329015 - 27329094
Alignment:
Q  15 atgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    ||||| |||||||||||||||||||| ||   |||||||||||||||| |||||||  ||||| ||| ||||||||||||    
T  27329015 atgaggtggcatgagagatgataagtagtgttaatacaaggactaaaaccaaaaacacaaatttacatagggatgaaatt 27329094  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 27320562 - 27320486
Alignment:
Q  16 tgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaa 92  Q
    |||| ||||||||||||| |||||| ||   |||||| ||||||||| |||||||| ||||| ||| ||||||||||    
T  27320562 tgaggtggcatgagagatcataagtagtgttaatacagggactaaaatcaaaaacgaaaatttacatagggatgaaa 27320486  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 31199624 - 31199675
Alignment:
Q  171 cataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaa 222  Q
    |||||||||| || |||||||||||| |||||||||||||||| | ||||||    
T  31199624 cataccttgctcctttgaaccaaaactcatatccttcaacaatgtcttctaa 31199675  T

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Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 41591692 - 41591785
Alignment:
Q  1 agttggcacatttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    |||||||| | |||||||||||| || |||||||||||||||||| || ||| ||||||||| |||||||||||||||||||||||||||||||    
T  41591692 agttggcaaagttgatgagatggaataagagatgataagttgttagaacacagggactaaaatcaaaaacgtaaattgacacagggatgaaatt 41591785  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 41385489 - 41385421
Alignment:
Q  171 cataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaatcat 239  Q
    |||||||||| ||||||||||||||| ||| |||||||||||| | |||||||||||||||||||||||    
T  41385489 cataccttgctcccttgaaccaaaactcatctccttcaacaatgtcttctaattccattactcaatcat 41385421  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 41385678 - 41385596
Alignment:
Q  12 ttgatgagatggcatgagagatgataagttgttaaaatacaaggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    ||||||||||  |||||||||||||||||||| | | ||| ||||||||||  |||||| |||||||||||||||||||||||    
T  41385678 ttgatgagataacatgagagatgataagttgtgagagtactaggactaaaataaaaaacataaattgacacagggatgaaatt 41385596  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 41591890 - 41591944
Alignment:
Q  168 tcccataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaa 222  Q
    |||||||||||||||| || ||||||||  |||||||||||||||| | ||||||    
T  41591890 tcccataccttgcgcctttaaaccaaaatccatatccttcaacaatgtcttctaa 41591944  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 41593052 - 41593012
Alignment:
Q  54 ggactaaaagcaaaaacgtaaattgacacagggatgaaatt 94  Q
    ||||||||| |||||||| ||||||||| ||||||||||||    
T  41593052 ggactaaaaccaaaaacgaaaattgacatagggatgaaatt 41593012  T

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Target: scaffold0129 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 3950 - 3886
Alignment:
Q  171 cataccttgcgcccttgaaccaaaacacatatccttcaacaatttattctaattccattactcaa 235  Q
    ||||||||||||||| |||||||||   || || ||||||||| | |||||||||||| ||||||    
T  3950 cataccttgcgccctagaaccaaaaactatctctttcaacaatgtcttctaattccataactcaa 3886  T

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