View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9757_low_15 (Length: 299)
Name: NF9757_low_15
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9757_low_15 |
 | |
|
| [»] scaffold0014 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 18663042 - 18663327
Alignment:
| Q |
1 |
tgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18663042 |
tgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
18663141 |
T |
|
| Q |
101 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18663142 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
18663241 |
T |
|
| Q |
201 |
gtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18663242 |
gtgtttgagatatgggatgatgtgtaggttgctttgtaaatagggattgttggatatttgaaggtgttttagatgtaagatgatgt |
18663327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 18663243 - 18663528
Alignment:
| Q |
1 |
tgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
100 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||| | | | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18663243 |
tgtttgagatatgggatgatgtgtaggttgctttgtaaatagggattgttggatatttgaaggtgttttagatgtaagatgatgtgtaggtttccttgta |
18663342 |
T |
|
| Q |
101 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18663343 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
18663442 |
T |
|
| Q |
201 |
gtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18663443 |
gtgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgttttagatgtaagatgatgt |
18663528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 18663444 - 18663696
Alignment:
| Q |
1 |
tgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
100 |
Q |
| |
|
|||||||||||||||||||||| | | ||| |||||| | | | ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
18663444 |
tgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgttttagatgtaagatgatgtgtaggtttcattgta |
18663543 |
T |
|
| Q |
101 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18663544 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagttagtat |
18663643 |
T |
|
| Q |
201 |
gtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttgg |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
18663644 |
gtgtttgagatatgggatgatgtgtaggttgctttgtagatagggattgttgg |
18663696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 98 - 286
Target Start/End: Original strand, 18662938 - 18663126
Alignment:
| Q |
98 |
gtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttg |
197 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
18662938 |
gtagagtggggagattggatatttgtaggtatttgagaggtgggagcatgaattgtagacatttgtggacttggagtagagaggaaaggtgggaaatttg |
18663037 |
T |
|
| Q |
198 |
tatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
286 |
Q |
| |
|
|| |||||||||||||||||||||| | |||||| ||||| | | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18663038 |
taaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgt |
18663126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 37461469 - 37461184
Alignment:
| Q |
1 |
tgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37461469 |
tgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaaattggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
37461370 |
T |
|
| Q |
101 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37461369 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggaaagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
37461270 |
T |
|
| Q |
201 |
gtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37461269 |
gtgtttgagatatgggatgatgtgtaggatgctttgtaaataaggattgttggatatttgaaggtgttttagatgtaagatgatgt |
37461184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 37461221 - 37461057
Alignment:
| Q |
48 |
gttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatg |
147 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37461221 |
gttggatatttgaaggtgttttagatgtaagatgatgtgtaggtttcattgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatg |
37461122 |
T |
|
| Q |
148 |
gacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtatgtgtttgagata |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37461121 |
gacattagacatttgtggacttgaagtagagaggaaaggtgggaagttagtatgtgtttgagata |
37461057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 98 - 286
Target Start/End: Complemental strand, 37461573 - 37461385
Alignment:
| Q |
98 |
gtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttg |
197 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
37461573 |
gtagagtggggagattggatatttgtaggtatttgagaggtgggagcatgaattgtagacatttgtggacttggagtagagaggaaaggtgggaaatttg |
37461474 |
T |
|
| Q |
198 |
tatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
286 |
Q |
| |
|
|| |||||||||||||||||||||| | ||||| ||||| | | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37461473 |
taaatgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaaattggatatttgaaggtgtgttagatgtaagatgatgt |
37461385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 13656562 - 13656847
Alignment:
| Q |
1 |
tgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13656562 |
tgtttgagatatgggatgatgtttcttttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
13656661 |
T |
|
| Q |
101 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13656662 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
13656761 |
T |
|
| Q |
201 |
gtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13656762 |
gtgtttgagatatgggatgatgtgtaggttgctttgtatatatggattgttggatatttgaaggtgttttagatgtaagatgatgt |
13656847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 13671208 - 13671493
Alignment:
| Q |
1 |
tgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671208 |
tgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
13671307 |
T |
|
| Q |
101 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671308 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
13671407 |
T |
|
| Q |
201 |
gtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671408 |
gtgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgttttagatgtaagatgatgt |
13671493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 13671409 - 13671694
Alignment:
| Q |
1 |
tgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
100 |
Q |
| |
|
|||||||||||||||||||||| | | ||| |||||| | | | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13671409 |
tgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgttttagatgtaagatgatgtgtaggtttccttgta |
13671508 |
T |
|
| Q |
101 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671509 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
13671608 |
T |
|
| Q |
201 |
gtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671609 |
gtgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgttttagatgtaagatgatgt |
13671694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 48 - 253
Target Start/End: Original strand, 5739307 - 5739512
Alignment:
| Q |
48 |
gttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatg |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5739307 |
gttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttcattgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatg |
5739406 |
T |
|
| Q |
148 |
gacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
5739407 |
gacagtagacatttgtggacttgaagtagagaggaaaggtgggaaatttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtagatagggat |
5739506 |
T |
|
| Q |
248 |
ttttgg |
253 |
Q |
| |
|
| |||| |
|
|
| T |
5739507 |
tgttgg |
5739512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 13671610 - 13671862
Alignment:
| Q |
1 |
tgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
100 |
Q |
| |
|
|||||||||||||||||||||| | | ||| |||||| | | | ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
13671610 |
tgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgttttagatgtaagatgatgtgtaggtttcattgta |
13671709 |
T |
|
| Q |
101 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13671710 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagttagtat |
13671809 |
T |
|
| Q |
201 |
gtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttgg |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
13671810 |
gtgtttgagatatgggatgatgtgtaggttgctttgtagatagggattgttgg |
13671862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 48 - 253
Target Start/End: Original strand, 13656810 - 13657015
Alignment:
| Q |
48 |
gttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatg |
147 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13656810 |
gttggatatttgaaggtgttttagatgtaagatgatgtgtaggtttcattgtagagtggggttgttggatatttgtaggtatttgagaagtgggagcatg |
13656909 |
T |
|
| Q |
148 |
gacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggat |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
13656910 |
gacagtagacatttgtggacttgaagtagagaggaaaggtgggaagttagtatgtgtttgagatatgggatgatgtgtaggttgctttgtagatagggat |
13657009 |
T |
|
| Q |
248 |
ttttgg |
253 |
Q |
| |
|
| |||| |
|
|
| T |
13657010 |
tgttgg |
13657015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 98 - 286
Target Start/End: Original strand, 5739156 - 5739344
Alignment:
| Q |
98 |
gtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttg |
197 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||||||| ||| | ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
5739156 |
gtagagtggggagattggatatttgtaggtatttgagaggtgggagtatgaattgtagacatttgtggacttggagtagagaggaaaggtgggaaatttg |
5739255 |
T |
|
| Q |
198 |
tatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
286 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||| ||| |||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5739256 |
tatgtgtttgagatatgagatgatgtgtaggctgctttgtagatagcgattgttggatatttgaaggtgtgttagatgtaagatgatgt |
5739344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 98 - 286
Target Start/End: Original strand, 13671104 - 13671292
Alignment:
| Q |
98 |
gtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttg |
197 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
13671104 |
gtagagtggggagattggatatttgtaggtatttgagaggtgggagcatgaattgtagacatttgtggacttggagtagagaggaaaggtgggaaatttg |
13671203 |
T |
|
| Q |
198 |
tatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
286 |
Q |
| |
|
|| |||||||||||||||||||||| | |||||| ||||| | | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13671204 |
taaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgt |
13671292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 98 - 286
Target Start/End: Original strand, 13656458 - 13656646
Alignment:
| Q |
98 |
gtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttg |
197 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
13656458 |
gtagagtggggagattggatatttgtaggtatttgagaggtgggagcatgaattgtagacatttgtggacttggagtagagaggaaaggtgggaaatttg |
13656557 |
T |
|
| Q |
198 |
tatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
286 |
Q |
| |
|
|| |||||||||||||||||||||| | |||| ||||| | | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13656558 |
taaatgtttgagatatgggatgatgtttcttttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgt |
13656646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 18581798 - 18581513
Alignment:
| Q |
1 |
tgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18581798 |
tgtttgagatatgggatgatgtttcgattgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
18581699 |
T |
|
| Q |
101 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18581698 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
18581599 |
T |
|
| Q |
201 |
gtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18581598 |
gtgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgttttagatgtaagatgatgt |
18581513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 18581597 - 18581345
Alignment:
| Q |
1 |
tgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
100 |
Q |
| |
|
|||||||||||||||||||||| | | ||| |||||| | | | ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
18581597 |
tgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgttttagatgtaagatgatgtgtaggtttcattgta |
18581498 |
T |
|
| Q |
101 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18581497 |
gagcggggttgttgggtatttgtaggtatttgagaaatgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagttagtat |
18581398 |
T |
|
| Q |
201 |
gtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttgg |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
18581397 |
gtgtttgagatatgggatgatgtgtaggttgctttgtagatagggattgttgg |
18581345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 98 - 286
Target Start/End: Complemental strand, 18581902 - 18581714
Alignment:
| Q |
98 |
gtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttg |
197 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||| ||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
18581902 |
gtagagtggggagattggatatttgtaggtatttgagaggtgagagcatgaattgtagacatttgtggacttggagtagagaggaaaggtgggaaatttg |
18581803 |
T |
|
| Q |
198 |
tatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
286 |
Q |
| |
|
|| |||||||||||||||||||||| | | |||| ||||| | | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18581802 |
taaatgtttgagatatgggatgatgtttcgattgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgt |
18581714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 12924072 - 12923790
Alignment:
| Q |
1 |
tgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12924072 |
tgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
12923973 |
T |
|
| Q |
101 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12923972 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
12923873 |
T |
|
| Q |
201 |
gtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
286 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12923872 |
ttttttgaga---gggatgatgtgtaggttgctttgtaaatagggattgttggatatttgaaggtgttttagatgtaagatgatgt |
12923790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 48 - 286
Target Start/End: Complemental strand, 12923827 - 12923589
Alignment:
| Q |
48 |
gttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatg |
147 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12923827 |
gttggatatttgaaggtgttttagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatg |
12923728 |
T |
|
| Q |
148 |
gacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| |
|
|
| T |
12923727 |
gacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtatgtgtttgagatatgggatgatgtgtaggctgctttgtagatagggat |
12923628 |
T |
|
| Q |
248 |
ttttggatatttgaaggtgttttagatgtaagatgatgt |
286 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12923627 |
tgttggatatttgaaggtgttttagatgtaagatgatgt |
12923589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 12923673 - 12923421
Alignment:
| Q |
1 |
tgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
100 |
Q |
| |
|
|||||||||||||||||||||| | | ||| |||||| | | | ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
12923673 |
tgtttgagatatgggatgatgtgtaggctgctttgtagatagggattgttggatatttgaaggtgttttagatgtaagatgatgtgtaggtttcattgta |
12923574 |
T |
|
| Q |
101 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12923573 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggatagtagacatttgtggacttgaagtagagaggaaaggtgggaagttagtat |
12923474 |
T |
|
| Q |
201 |
gtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttgg |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
12923473 |
gtgtttgagatatgggatgatgtgtaggttgctttgtagatagggattgttgg |
12923421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 98 - 286
Target Start/End: Complemental strand, 12924176 - 12923988
Alignment:
| Q |
98 |
gtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttg |
197 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
12924176 |
gtagagtggggagattggatatatgtaggtatttgagaggtgggagcatgaattgtagacatttgtggacttggagtagagaggaaaggtgggaaatttg |
12924077 |
T |
|
| Q |
198 |
tatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
286 |
Q |
| |
|
|| |||||||||||||||||||||| | ||||| ||||| | | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12924076 |
taaatgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgt |
12923988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 19540742 - 19540801
Alignment:
| Q |
68 |
ttagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggt |
127 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19540742 |
ttagatgtgagatgatatgtaggttgccttgtagagtggggttgttgggtatttgtaggt |
19540801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 19540631 - 19540702
Alignment:
| Q |
55 |
atttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgtagagtggggttgttgggtatttgtaggt |
127 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| |||||||||||||||| |||||| | ||||||||||| |
|
|
| T |
19540631 |
atttgaaggtattttagatgtaagatgatgtgtagatttccttgtagagtggtgttgtt-gatatttgtaggt |
19540702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 22806 - 22565
Alignment:
| Q |
1 |
tgtttgagatatgggatgatgtttcagttgccttgtaggttgtggaagttggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22806 |
tgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaaattggatatttgaaggtgtgttagatgtaagatgatgtgtaggtttccttgta |
22707 |
T |
|
| Q |
101 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttgtat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22706 |
gagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggaaagtagacatttgtggacttgaagtagagaggaaaggtgggaagttagtat |
22607 |
T |
|
| Q |
201 |
gtgtttgagatatgggatgatgtgtaggttgctttgtaaata |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22606 |
gtgtttgagatatgggatgatgtgtaggttgctttgtaaata |
22565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 98 - 286
Target Start/End: Complemental strand, 22910 - 22722
Alignment:
| Q |
98 |
gtagagtggggttgttgggtatttgtaggtatttgagaagtgggagcatggacagtagacatttgtggacttgaagtagagaggaaaggtgggaagtttg |
197 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||| ||||||||||| |||| |
|
|
| T |
22910 |
gtagagtggggagattggatatttgtaggtatttgagaggtgggagcatgaattgtagacatttgtggacttggagtagagagcaaaggtgggaaatttg |
22811 |
T |
|
| Q |
198 |
tatgtgtttgagatatgggatgatgtgtaggttgctttgtaaataaggatttttggatatttgaaggtgttttagatgtaagatgatgt |
286 |
Q |
| |
|
|| |||||||||||||||||||||| | |||||| ||||| | | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22810 |
taaatgtttgagatatgggatgatgtttcggttgccttgtaggttgtggaaattggatatttgaaggtgtgttagatgtaagatgatgt |
22722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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