View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9757_low_16 (Length: 295)
Name: NF9757_low_16
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9757_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 12 - 295
Target Start/End: Complemental strand, 5951310 - 5951018
Alignment:
| Q |
12 |
agaaccaaccggatatcgatgtgcgaagtctaagctgttcgaaaaataggacttgaacaattactcttagaggcaatctttcattttgtgctgcatgact |
111 |
Q |
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| T |
5951310 |
agaaccaaccggatatcgatgtgcgaagtctaagttgttcgaaaaataggacttgaacaattactcttagaggcaatctttcattttgtgctgcatgact |
5951211 |
T |
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| Q |
112 |
gcttccttccaatgatagcttttggcaattcattagtctgcatagttgttcccgttccgaatctgtcagccatgtatgtgcctgaagtttttcgttacat |
211 |
Q |
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| T |
5951210 |
gcttccttccaatgatagcttttggcaattcattagtctgcatagttgttcccgttccgaatctgtcagccatgtatgtgcctgaagtttttcgttacat |
5951111 |
T |
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| Q |
212 |
tttgaaatatttaggaacaaaagaaaacaatagtaaagt---------acatgattgtgatttcatggtactaaatttgtgaaaggttaattc |
295 |
Q |
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| T |
5951110 |
tttgaaatatttaggaacaaaagaaaacaatagtaaagtttaattagcacatgattgtgatttcatggtactaaatttgtgaaaggttcattc |
5951018 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 194
Target Start/End: Original strand, 28320052 - 28320217
Alignment:
| Q |
29 |
gatgtgcgaagtctaagctgttcgaaaaataggacttgaacaattactcttagaggcaatctttcattttgtgctgcatgactgcttccttccaatgata |
128 |
Q |
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| T |
28320052 |
gatgtacgaagtcgaagttgttcaaaaaacaagacctgcactattactctcagtggtatccgttcattttgtgcagcatgtgtgcttgcttctaatgaca |
28320151 |
T |
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| Q |
129 |
gcttttggcaattcattagtctgcatagttgttcccgttccgaatctgtcagccatgtatgtgcct |
194 |
Q |
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| T |
28320152 |
acttttggcagttcatgagtctacaaaattgttccctttcagaatctattagccatggatgtgcct |
28320217 |
T |
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