View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9757_low_17 (Length: 250)
Name: NF9757_low_17
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9757_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 24935702 - 24935464
Alignment:
| Q |
1 |
tgtgttaatgtatatataggaaaagtttatgatttgggaggacaagttctagctgcaagcagtgctccagtgatctttcacttggcaaaagagacaggat |
100 |
Q |
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| T |
24935702 |
tgtgttaatgtatatataggaaaagtttatgatttgggaggacaagttctagctgcaagcagtgctccagtgatctttcacttggcaaaagagacaggat |
24935603 |
T |
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| Q |
101 |
ctgcattggaagaattggactcacacaagcttgcagttcttgaccctacctctggagaatatcaagatattaaagttgctgatgattatgtatctgttat |
200 |
Q |
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||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24935602 |
ctgcattggaagaattggactcacacaagctagctgttgttgaccctacctctggagaatatcaagatattaaagttgctgatgattatgtatctgttat |
24935503 |
T |
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| Q |
201 |
gtcacttacattggaaatacaagttagtctctattctct |
239 |
Q |
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| T |
24935502 |
gtcacttacattggaaatacaagttagtctctattctct |
24935464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 42130906 - 42130694
Alignment:
| Q |
18 |
aggaaaagtttatgatttgggaggacaagttctagctgcaagcagtgctccagtgatctttcacttggcaaaagagacaggatctgcattggaagaattg |
117 |
Q |
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|||||||||||||||| |||| || |||||||| || |||||||||||||| || ||||||||||||||||||||||||| ||||||| | ||||||||| |
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| T |
42130906 |
aggaaaagtttatgatctgggcgggcaagttctggccgcaagcagtgctcctgtcatctttcacttggcaaaagagacagaatctgcactagaagaattg |
42130807 |
T |
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| Q |
118 |
gactcacacaagcttgcagttcttgaccctacctctggagaatatcaagatattaaagttgctgatgattatgtatctgttatgtcacttacattggaaa |
217 |
Q |
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||||| |||||||| || || ||||| || |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
42130806 |
gactctcacaagctagctattattgacacttcctcaggaaaataccaagatattaaagttgctgatgattatgtatctgttatgtcacttacactgaaaa |
42130707 |
T |
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| Q |
218 |
tacaagttagtct |
230 |
Q |
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| T |
42130706 |
tccaagttagtct |
42130694 |
T |
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