View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9757_low_18 (Length: 250)

Name: NF9757_low_18
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9757_low_18
NF9757_low_18
[»] chr8 (2 HSPs)
chr8 (9-116)||(12593701-12593805)
chr8 (120-161)||(12593625-12593666)
[»] chr6 (8 HSPs)
chr6 (9-68)||(28502270-28502329)
chr6 (9-68)||(29814676-29814735)
chr6 (117-245)||(29670098-29670227)
chr6 (16-116)||(28485964-28486061)
chr6 (16-116)||(29798376-29798473)
chr6 (182-250)||(28486092-28486160)
chr6 (182-250)||(29798504-29798572)
chr6 (14-105)||(29688176-29688264)


Alignment Details
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 12593805 - 12593701
Alignment:
Q  9 agcagagagtactttgcagagaatgaaaacctaaatgccaccacaacagtagtaatcttgaattctacaatcccttgactatgataccaaaaaatgacag 108  Q
    |||| |||||||| || |||||||||||||||||||||||||||||   ||| ||||||||||| | |||||||||||||||| ||||||| ||||||||    
T  12593805 agcacagagtactatgtagagaatgaaaacctaaatgccaccacaa---tagcaatcttgaattttgcaatcccttgactatgttaccaaacaatgacag 12593709  T
Q  109 tattacat 116  Q
    ||||||||    
T  12593708 tattacat 12593701  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 12593666 - 12593625
Alignment:
Q  120 atgaagttctagaactcactcagattggatttagaaatgtgg 161  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  12593666 atgaagttctagaactcacttagattggatttagaaatgtgg 12593625  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 28502270 - 28502329
Alignment:
Q  9 agcagagagtactttgcagagaatgaaaacctaaatgccaccacaacagtagtaatcttg 68  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28502270 agcacagagtactttgcagagaatgaaaacctaaatgccaccacaacagtagtaatcttg 28502329  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 29814676 - 29814735
Alignment:
Q  9 agcagagagtactttgcagagaatgaaaacctaaatgccaccacaacagtagtaatcttg 68  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29814676 agcacagagtactttgcagagaatgaaaacctaaatgccaccacaacagtagtaatcttg 29814735  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 29670098 - 29670227
Alignment:
Q  117 ccaatgaagttctagaactcactcagattggatttagaaatgtggactccga-catctaaaataataatccaaatcaaagctaacagtcaaacaagatcc 215  Q
    ||||||||||||| | |||| |||| |||| ||||| ||||||| ||||  | |||||||||||| ||| |||||||||||||||| || |  ||||||     
T  29670098 ccaatgaagttctcgtactccctcaaattgaatttataaatgtgaactctaaacatctaaaataacaattcaaatcaaagctaacaatcgagtaagatca 29670197  T
Q  216 catataccactgttaagatagcataaattg 245  Q
    |||||||||  |||||||||||||||||||    
T  29670198 catataccatcgttaagatagcataaattg 29670227  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 28485964 - 28486061
Alignment:
Q  16 agtactttgcagagaatgaaaacctaaatgccaccacaacagtagtaatcttgaattctacaatcccttgactatgataccaaaaaatgacagtattaca 115  Q
    |||||| || ||||||||||||||||||||||||||||  |||| |||||||||||||  |||| ||  ||||   ||||||||| ||||||||||||||    
T  28485964 agtactatgtagagaatgaaaacctaaatgccaccacagtagtaataatcttgaattccgcaataccccgact---ataccaaaatatgacagtattaca 28486060  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 29798376 - 29798473
Alignment:
Q  16 agtactttgcagagaatgaaaacctaaatgccaccacaacagtagtaatcttgaattctacaatcccttgactatgataccaaaaaatgacagtattaca 115  Q
    |||||| || ||||||||||||||||||||||||||||  |||| |||||||||||||  |||| ||  ||||   ||||||||| ||||||||||||||    
T  29798376 agtactatgtagagaatgaaaacctaaatgccaccacagtagtaataatcttgaattccgcaataccccgact---ataccaaaatatgacagtattaca 29798472  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 28486092 - 28486160
Alignment:
Q  182 aatccaaatcaaagctaacagtcaaacaagatcccatataccactgttaagatagcataaattgctcct 250  Q
    ||||||||||||||||||||||  || |||||||||||| |||| ||||||||||| |||||| |||||    
T  28486092 aatccaaatcaaagctaacagtggaataagatcccatatgccaccgttaagatagcgtaaatttctcct 28486160  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 29798504 - 29798572
Alignment:
Q  182 aatccaaatcaaagctaacagtcaaacaagatcccatataccactgttaagatagcataaattgctcct 250  Q
    ||||||||||||||||||||||  || |||||||||||| |||| ||||||||||| |||||| |||||    
T  29798504 aatccaaatcaaagctaacagtggaataagatcccatatgccaccgttaagatagcgtaaatttctcct 29798572  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 29688176 - 29688264
Alignment:
Q  14 agagtactttgcagagaatgaaaacctaaatgccaccacaacagtagtaatcttgaattctacaatcccttgactatgataccaaaaaatga 105  Q
    |||||| | |||||| ||||||||||||| ||||||||||    |||||||| ||||||| | |||||   |||||||||||||||||||||    
T  29688176 agagtaatatgcagataatgaaaacctaactgccaccacat---tagtaatcatgaattccaaaatcctgggactatgataccaaaaaatga 29688264  T

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