View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9757_low_23 (Length: 238)
Name: NF9757_low_23
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9757_low_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5950879 - 5950662
Alignment:
| Q |
1 |
cttgtatatgatatcttcaactcttatttctcatctctcaacacttagtagcagtaattagaagtatattttgaggaaagaaaatgtacatagaaattta |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5950879 |
cttgtatatgacatcttcaactcttatttctcatctctcaacacttagtagcagtaattagaa-----ttttgaggaaagaaaatgtacatagaaattta |
5950785 |
T |
|
| Q |
101 |
atctatgatttttatttagggacaannnnnnnactcattaattcatcaacattgaaatcatcacaaatctcactatttcctccacaatcttagttcttca |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5950784 |
atctatgatttttatttagggacaatttttttactcattaattcatcaacattgaaatcatcacaaatctcactatttcctccacaatcttagttcttca |
5950685 |
T |
|
| Q |
201 |
taaattttctactatgccaaaac |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5950684 |
taaattttctactatgccaaaac |
5950662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University