View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9757_low_25 (Length: 226)
Name: NF9757_low_25
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9757_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 50235467 - 50235344
Alignment:
| Q |
88 |
ctcctggcttctctctctcgcggaaacaacaactactgtcaatcctcttcaggcctggtcttggatttggagactgaaaattccagagaaatacaagtta |
187 |
Q |
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| T |
50235467 |
ctcctggcttatctctctctcggaaactataaataatgttaatccccatcagtcttggtcttggatttggagattgaaaattccagagaaatacaagtta |
50235368 |
T |
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| Q |
188 |
cttatttggcttgcctgccataac |
211 |
Q |
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| T |
50235367 |
cttatttggcttgcatgccataac |
50235344 |
T |
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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 46255917 - 46255849
Alignment:
| Q |
14 |
gcataggctaactcaaatgtatttatttcggtgtccaacattttccattgtcaaaatagcatttctctt |
82 |
Q |
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| T |
46255917 |
gcataggctaactcaaatgtatttatttcggtgtccaacattttccattgtcaaaatagcatttctctt |
46255849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 15472301 - 15472233
Alignment:
| Q |
143 |
tggtcttggatttggagactgaaaattccagagaaatacaagttacttatttggcttgcctgccataac |
211 |
Q |
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| T |
15472301 |
tggtcttggatttggtaactgaaggtccccgaaaaatacaagttcctaatttggcttgcctgtcataac |
15472233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 37151298 - 37151238
Alignment:
| Q |
143 |
tggtcttggatttggagactgaaaattccagagaaatacaagttacttatttggcttgcct |
203 |
Q |
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| T |
37151298 |
tggtcttggatttggcaactgaaggttccagaaaaatacaagttcctaatctggcttgcct |
37151238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 8240024 - 8239966
Alignment:
| Q |
143 |
tggtcttggatttggagactgaaaattccagagaaatacaagttacttatttggcttgc |
201 |
Q |
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| T |
8240024 |
tggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgc |
8239966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 15806370 - 15806314
Alignment:
| Q |
143 |
tggtcttggatttggagactgaaaattccagagaaatacaagttacttatttggctt |
199 |
Q |
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| T |
15806370 |
tggtcttgaatttggagaatgaaaattccggaaaaatacaagttcattctttggctt |
15806314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 21403876 - 21403937
Alignment:
| Q |
143 |
tggtcttggatttggagactgaaaattccagagaaatacaagttacttatttggcttgcctg |
204 |
Q |
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| T |
21403876 |
tggtcttggatttggcgtctgaaagttcctgaaaaatacaagtttctaatttggcttgcctg |
21403937 |
T |
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