View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9757_low_27 (Length: 205)
Name: NF9757_low_27
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9757_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 164; Significance: 7e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 35279197 - 35279368
Alignment:
| Q |
19 |
atatatacatacataccagggggaattgatccagtaatgtgagcttcgtttgcgaaaagctcagcacagcgtaacaatcctctcttcttgaagtaatcat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35279197 |
atatatacatacataccagggggaattgatccagtaatgtgagcttcgtttgcaaaaagctcagcacagcgtaacaatcctctcttcttgaagtaatcat |
35279296 |
T |
|
| Q |
119 |
gaataaagatatcaaaactacacagaacaaacgataaattatatggataagaagcattttaagaaagaaaat |
190 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35279297 |
gaataaagatatcaaaactacacagaacgaacgataaattatatggataagaagcattttaagaaagaaaat |
35279368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 35242708 - 35242808
Alignment:
| Q |
96 |
tcctctcttcttgaagtaatcatgaataaagatatcaaaactacacagaacaaacgataaattatatgga------taagaagcattttaagaaagaaaa |
189 |
Q |
| |
|
||||||||| |||||||||||||| | ||| |||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35242708 |
tcctctctttttgaagtaatcatgcaataaggtatcaagactacacagaacagacgataaattatatggataagattaagaagcattttaagaaagaaaa |
35242807 |
T |
|
| Q |
190 |
t |
190 |
Q |
| |
|
| |
|
|
| T |
35242808 |
t |
35242808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 35272667 - 35272720
Alignment:
| Q |
94 |
aatcctctcttcttgaagtaatcatgaataaagatatcaaaactacacagaaca |
147 |
Q |
| |
|
|||||| ||||||||| ||||||||| | |||||| | |||||||||||||||| |
|
|
| T |
35272667 |
aatcctttcttcttgaggtaatcatgcagaaagatttgaaaactacacagaaca |
35272720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University