View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9757_low_3 (Length: 557)

Name: NF9757_low_3
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9757_low_3
NF9757_low_3
[»] chr1 (8 HSPs)
chr1 (87-387)||(12540979-12541275)
chr1 (436-520)||(12541275-12541359)
chr1 (244-359)||(12534973-12535092)
chr1 (252-303)||(47569740-47569791)
chr1 (252-316)||(28239767-28239831)
chr1 (369-412)||(12531936-12531979)
chr1 (11-59)||(12535197-12535245)
chr1 (256-302)||(14508386-14508432)
[»] chr2 (2 HSPs)
chr2 (35-148)||(36007875-36007987)
chr2 (252-294)||(16375795-16375837)
[»] chr6 (1 HSPs)
chr6 (259-318)||(384134-384193)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 4e-70; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 87 - 387
Target Start/End: Original strand, 12540979 - 12541275
Alignment:
Q  87 tattactgaggttaattattatgattatatttatttcaagtgtgttcttgtttgaccttagcatgcctgataaaaataataatttggtgctagctgtaca 186  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||||| ||||      |||  ||||||||||     
T  12540979 tattacttaggttaattattatgattatatttatttcatgtgtgttcttgcttgaccttagctttcctgataataata------tgggtctagctgtacc 12541072  T
Q  187 atacagaaatagtgatggatgttgcaaaggaaggacagaaggagctactt---gcctattgaatattctagattacatgctttctagttttctaatttaa 283  Q
    |||  ||||||  |||||||  | |||||||||||| ||||||||||| |   |||  | ||||||| ||||||||||||||||||||||| ||||||||    
T  12541073 atattgaaataaggatggatccttcaaaggaaggacggaaggagctacgtcctgccggtggaatattgtagattacatgctttctagttttttaatttaa 12541172  T
Q  284 ggaccatgcttctgcttttactttcacttctatagctttgcttccaagtgtgtgtactggaaaataataatgttttaattaatgctattctaatttgatc 383  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||  ||||||||||  ||||||||||| ||    
T  12541173 ggaccatgcttctgcttttactttcacttctacatctttgcttccaagtgtgtgcactgcaaaataataatg-cttaattaatgtaattctaatttgttc 12541271  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 436 - 520
Target Start/End: Original strand, 12541275 - 12541359
Alignment:
Q  436 tgtttcttgttttatattttctcttcaataatgccttatgattgtcttgacttgtgacattttcttcggatggatattactctta 520  Q
    |||||||||||||||||||||||||  || ||||||||| ||||||||| |||||||||||||||| |||||||| |||||||||    
T  12541275 tgtttcttgttttatattttctctttgattatgccttatcattgtcttgccttgtgacattttctttggatggatcttactctta 12541359  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 359
Target Start/End: Complemental strand, 12535092 - 12534973
Alignment:
Q  244 gaatattctagattacatgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttcta----tagctttgcttccaagtgtgtgta 339  Q
    ||||||| |||| ||| |||||||||||||||||||| |||||| ||||||||| |||||||  || |||||    ||  |||||||||||||||||| |    
T  12535092 gaatattgtagactacttgctttctagttttctaattaaaggactatgcttctgtttttactcgcatttctatatgtaagtttgcttccaagtgtgtgca 12534993  T
Q  340 ctggaaaataataatgtttt 359  Q
    || ||||||||  |||||||    
T  12534992 ctagaaaataacgatgtttt 12534973  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 47569740 - 47569791
Alignment:
Q  252 tagattacatgctttctagttttctaatttaaggaccatgcttctgctttta 303  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||||    
T  47569740 tagattacatgctttctagttttctaatttaaggactatgtttttgctttta 47569791  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 28239767 - 28239831
Alignment:
Q  252 tagattacatgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttctat 316  Q
    |||||||||||||||||||||| |||||||||||||  || || |||||||| || |||||||||    
T  28239767 tagattacatgctttctagtttgctaatttaaggactttgtttttgcttttaattgcacttctat 28239831  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 412
Target Start/End: Complemental strand, 12531979 - 12531936
Alignment:
Q  369 tattctaatttgatcatgtctgcgtatttggcccatatatgttc 412  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||    
T  12531979 tattctaatttgatcgtgtctgcgtatttggccgatatatgttc 12531936  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 12535245 - 12535197
Alignment:
Q  11 caaaggtgaaagagttaaggttgctagaaatgtggaagagttgagtttg 59  Q
    |||||||| ||||||||||||||| ||||| ||||||||| ||||||||    
T  12535245 caaaggtggaagagttaaggttgcaagaaaagtggaagagctgagtttg 12535197  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 14508432 - 14508386
Alignment:
Q  256 ttacatgctttctagttttctaatttaaggaccatgcttctgctttt 302  Q
    |||||||||||||| |||||||||| |||||| |||||| |||||||    
T  14508432 ttacatgctttctatttttctaattaaaggactatgcttttgctttt 14508386  T

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Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 36007987 - 36007875
Alignment:
Q  35 tagaaatgtggaagagttgagtttgtcattttccaatctttttcttggaacat-attactgaggttaattattatgattatatttatttcaagtgtgttc 133  Q
    |||||| ||||||||||||||||||  |||||||  | | ||||| |||| || ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  36007987 tagaaaggtggaagagttgagtttgagattttccgtt-tgtttct-ggaaaatcattactgaggttaattattttgattatatttatttcaagggtgttc 36007890  T
Q  134 ttgtttgaccttagc 148  Q
    ||| |||||||||||    
T  36007889 ttgcttgaccttagc 36007875  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 16375795 - 16375837
Alignment:
Q  252 tagattacatgctttctagttttctaatttaaggaccatgctt 294  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||    
T  16375795 tagattacatgctttgtagttttctaattaaaggatcatgctt 16375837  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 318
Target Start/End: Complemental strand, 384193 - 384134
Alignment:
Q  259 catgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttctatag 318  Q
    |||||||||||||||||||||||| | || ||||||||||||||| || |||||||||||    
T  384193 catgctttctagttttctaatttatgcactatgcttctgcttttagttgcacttctatag 384134  T

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