View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9757_low_4 (Length: 491)

Name: NF9757_low_4
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9757_low_4
NF9757_low_4
[»] chr3 (11 HSPs)
chr3 (18-480)||(1425826-1426288)
chr3 (18-480)||(1447917-1448380)
chr3 (18-473)||(1470392-1470857)
chr3 (297-364)||(46145786-46145853)
chr3 (294-351)||(19757714-19757771)
chr3 (316-408)||(32490325-32490417)
chr3 (301-351)||(19736812-19736862)
chr3 (294-360)||(51448288-51448354)
chr3 (294-360)||(52138465-52138531)
chr3 (316-361)||(29817141-29817186)
chr3 (316-361)||(48221420-48221465)
[»] chr8 (7 HSPs)
chr8 (293-405)||(41444882-41444994)
chr8 (296-405)||(25985134-25985241)
chr8 (294-351)||(15215849-15215906)
chr8 (294-360)||(12492421-12492487)
chr8 (294-360)||(36565820-36565886)
chr8 (331-364)||(35094837-35094870)
chr8 (322-362)||(3285124-3285164)
[»] chr5 (8 HSPs)
chr5 (316-405)||(6368526-6368615)
chr5 (294-361)||(2076053-2076120)
chr5 (294-361)||(20318627-20318694)
chr5 (294-360)||(3301486-3301552)
chr5 (294-360)||(3394347-3394413)
chr5 (294-360)||(28977436-28977502)
chr5 (302-363)||(37124204-37124265)
chr5 (290-362)||(3096817-3096889)
[»] chr4 (9 HSPs)
chr4 (294-354)||(10775998-10776058)
chr4 (294-360)||(435866-435932)
chr4 (294-360)||(23906880-23906946)
chr4 (303-353)||(30807242-30807292)
chr4 (294-360)||(33226846-33226912)
chr4 (294-360)||(39708094-39708160)
chr4 (330-368)||(43562329-43562367)
chr4 (294-360)||(48174672-48174738)
chr4 (293-355)||(17667907-17667966)
[»] chr1 (8 HSPs)
chr1 (289-405)||(28528173-28528289)
chr1 (301-375)||(6640748-6640822)
chr1 (294-360)||(8671557-8671623)
chr1 (294-360)||(51601695-51601761)
chr1 (324-405)||(16273438-16273519)
chr1 (316-364)||(40419314-40419362)
chr1 (296-360)||(43240962-43241026)
chr1 (52-136)||(52442825-52442909)
[»] chr2 (5 HSPs)
chr2 (294-360)||(11992685-11992751)
chr2 (316-414)||(26433786-26433884)
chr2 (294-360)||(2610165-2610231)
chr2 (294-360)||(8180417-8180483)
chr2 (329-362)||(28317381-28317414)
[»] scaffold0113 (1 HSPs)
scaffold0113 (294-349)||(12177-12232)
[»] chr7 (4 HSPs)
chr7 (294-360)||(32630244-32630310)
chr7 (294-360)||(46356430-46356496)
chr7 (316-405)||(32484079-32484168)
chr7 (327-364)||(33737943-33737980)
[»] chr6 (2 HSPs)
chr6 (294-360)||(10100436-10100502)
chr6 (294-351)||(20428215-20428272)
[»] scaffold0570 (1 HSPs)
scaffold0570 (294-351)||(2849-2906)
[»] scaffold0171 (1 HSPs)
scaffold0171 (294-351)||(5838-5895)


Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 480
Target Start/End: Original strand, 1425826 - 1426288
Alignment:
Q  18 aaatttatgttcatgttagctctaattctatcccgtctaatcttactataaatcgaacacaacttcctcatatctactatgcttaatttatgtttgtgct 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| ||||    
T  1425826 aaatttatgttcatgttagctctaattctattccgtctaatcttactatacatccaacacaacgtcctcatatctactatgcttaatttatgtttttgct 1425925  T
Q  118 gattgtttaccaccaaacatcatcagctttattgatgttcgatnnnnnnnttctttcaacatgaacggtactttcgaatcacacaaaacacacgaggcat 217  Q
    | |||||||||||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1425926 ggttgtttaccaccaaacatcatcagctttattgatgttcgataaaaaaattctttcaacgtgaacggtactttcgaatcacacaaaacacacgaggcat 1426025  T
Q  218 tcgtctagttcaaccacccatccatgggtttgatgatttacatctccttctatttatttgttgtttttcttcataaacccaaaatatttaaaccatacaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1426026 tcgtctagttcaaccacccatccatgggtttgatgatttacatctccttctatttatttgttgtttttctttataaacccaaaatatttaaaccatacaa 1426125  T
Q  318 cttttggtataatatgatctccaactttcacctctaagttagaaatgtttcatctcttgttaaaattttatttcatatactttgtctttttctacttatg 417  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  1426126 cttttggtataatatgatctccaactttcacctttaagttagaaatgtttcacctcttgttaaaattttatttcatatactttgtctttttctacatatg 1426225  T
Q  418 tgaaagccaaatgtttttaagattttctcaaagtatctaacctcacaagtaattctgctctct 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1426226 tgaaagccaaatgtttttaagattttctcaaagtatctaacctcacaagtaattcttctctct 1426288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 480
Target Start/End: Original strand, 1447917 - 1448380
Alignment:
Q  18 aaatttatgttcatgttagctctaattctatcccgtctaatcttactataaatcgaacacaacttcctcatatctactatgcttaatttatgtttgtgct 117  Q
    ||||||||||||| ||||||||||||| |||||| |||| |||||||| | ||| ||||||||||| ||||||||| ||||||||||||||||||||| |    
T  1447917 aaatttatgttca-gttagctctaattttatcccctctagtcttactacacatccaacacaacttcttcatatctattatgcttaatttatgtttgtgtt 1448015  T
Q  118 gattgtttaccaccaaacatcatcagctttattgatgttcgatnnnnnnnttctttcaaca--tgaacggtactttcgaatcacacaaaacacacgaggc 215  Q
    | |||||||||||||||||||||||| ||||||||||||||||       || ||||||||  |||   ||||||||| |||||| ||||||||||||||    
T  1448016 ggttgtttaccaccaaacatcatcagttttattgatgttcgataaaaat-ttatttcaacacgtgagtagtactttcgcatcacataaaacacacgaggc 1448114  T
Q  216 attcgtctagttcaaccacccatccatgggtttgatgatttacatctccttctatttatttgttgtttttcttcataaacccaaaatatttaaaccatac 315  Q
    |||| || | ||||||||||||| || || ||||||||||||||||||||| ||||| |||||||||||||   |||||||||||||||||||||||| |    
T  1448115 attcctccatttcaaccacccatgcaagg-tttgatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaaccatgc 1448213  T
Q  316 aacttttggtataatatgatctccaactttcacctctaagttagaaatgtttcatctcttgttaaaattttatttcatatactttgtcttt-ttctactt 414  Q
    |||||||| ||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||     
T  1448214 aacttttgatatgatatgatctccaacttttacctctaagctagaaatgtttcacctcttgttaaaattttatttcatatattttgtctttcttctactc 1448313  T
Q  415 atgtgaaagccaaatg-tttttaagattttctcaaagtatctaacctcacaagtaattctgctctct 480  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  1448314 atgtgaaagccaaacgttttttaagattttctcaaagtatctaacctcaaaagtaattcttctctct 1448380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 18 - 473
Target Start/End: Original strand, 1470392 - 1470857
Alignment:
Q  18 aaatttatgttcatgttagctctaattctatcccgtctaatcttactataaatcgaacacaacttcctcatatctactatgcttaatttatgtttgtgct 117  Q
    ||||||||||||||||||| ||||||||||||  |||||  ||||| | | | | ||||||||||    || |||||||||||||||||||||||||| |    
T  1470392 aaatttatgttcatgttaggtctaattctatcatgtctagccttacaacatacccaacacaacttttgtatctctactatgcttaatttatgtttgtgtt 1470491  T
Q  118 gattgtttaccaccaaacatcatcagctttattgatgttcgatnnnnnnn----------ttctttcaacatgaacggtactttcgaatcacacaaaaca 207  Q
    | ||| ||||||||||||||| |  | |||| | |||||||||                 |||||||||  |||  ||| |||| | |||||| |||| |    
T  1470492 ggttgcttaccaccaaacatcgttggttttactaatgttcgataaaaaaaaaaaaaaaaattctttcaatgtgagtggtgcttt-gcatcacataaaata 1470590  T
Q  208 cacgaggcattcgtctagttcaaccacccatccatgggtttgatgatttacatctccttctatttatttgttgtttttcttcataaacccaaaatattta 307  Q
    ||| || ||||| || | ||| |||||||||| | |||||||||||||||||| |||||||||| ||||||||||||||   ||||||| ||||||||||    
T  1470591 cacaagacattcctccatttctaccacccatcta-gggtttgatgatttacatttccttctattcatttgttgtttttcactataaaccaaaaatattta 1470689  T
Q  308 aaccatacaacttttggtataatatgatctccaactttcacctctaagttagaaatgtttcatctcttgttaaaattttatttcatatactttgtcttt- 406  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||  | ||||| |||| |||||| ||||||||||||||||||||| |||||||     
T  1470690 aaccatgcaacttttggtatgatatgatctccaactttcacctctaagcaataaatgattcacctcttgctaaaattttatttcatatactctgtcttta 1470789  T
Q  407 ttctacttatgtgaaagccaaatgtttttaag-attttctcaaagtatctaacctcacaagtaattct 473  Q
    ||||||| ||  |||| ||||| |||||| || ||||||| ||||||||||||||||| || ||||||    
T  1470790 ttctactcatacgaaacccaaacgttttttagaattttctaaaagtatctaacctcactaggaattct 1470857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 364
Target Start/End: Complemental strand, 46145853 - 46145786
Alignment:
Q  297 caaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttagaaatg 364  Q
    ||||||||||||||| || ||||| |||||| | || |||||||||||| |||||||||||| |||||    
T  46145853 caaaatatttaaaccgtataacttgtggtatgacataatctccaactttaacctctaagttaaaaatg 46145786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 19757771 - 19757714
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 351  Q
    |||||| |||||||||||||  |||||  ||||| |||||||||||||||||||||||    
T  19757771 acccaagatatttaaaccatgtaacttggggtatgatatgatctccaactttcacctc 19757714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 408
Target Start/End: Original strand, 32490325 - 32490417
Alignment:
Q  316 aacttttggtataatatgatctccaactttcacctctaagttagaaatgtttcatctcttgttaaaattttatttcatatactttgtcttttt 408  Q
    ||||| |||||| ||||||||| ||||||||| || |||||||||||   |||| || ||| |||| ||  |||||||||||| |||||||||    
T  32490325 aacttgtggtatgatatgatcttcaactttcatctataagttagaaacacttcaccttttgctaaacttgcatttcatatactctgtcttttt 32490417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 19736862 - 19736812
Alignment:
Q  301 atatttaaaccatacaacttttggtataatatgatctccaactttcacctc 351  Q
    |||||||||||||  |||||  ||||| |||||||||||||||||||||||    
T  19736862 atatttaaaccatgtaacttggggtatgatatgatctccaactttcacctc 19736812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Original strand, 51448288 - 51448354
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  51448288 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtaga 51448354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 52138531 - 52138465
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  52138531 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtaga 52138465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 29817186 - 29817141
Alignment:
Q  316 aacttttggtataatatgatctccaactttcacctctaagttagaa 361  Q
    ||||| |||||| ||||||||||||||||||||||| ||| |||||    
T  29817186 aacttatggtatgatatgatctccaactttcacctccaagatagaa 29817141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 48221465 - 48221420
Alignment:
Q  316 aacttttggtataatatgatctccaactttcacctctaagttagaa 361  Q
    ||||| |||||| ||||||||| ||||||||||||||||| |||||    
T  48221465 aacttgtggtatgatatgatcttcaactttcacctctaagatagaa 48221420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 293 - 405
Target Start/End: Original strand, 41444882 - 41444994
Alignment:
Q  293 aacccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttagaaatgtttcatctcttgttaaaattttatttca 392  Q
    ||||||| ||||||||||||   ||||| |||||| |||||||||||| ||||||||||||||||||||||| |||  || ||| |||||||  ||| ||    
T  41444882 aacccaagatatttaaaccaagtaacttgtggtatgatatgatctccacctttcacctctaagttagaaatgcttcgccttttgctaaaattacattcca 41444981  T
Q  393 tatactttgtctt 405  Q
    |||||||| ||||    
T  41444982 tatactttatctt 41444994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 405
Target Start/End: Complemental strand, 25985241 - 25985134
Alignment:
Q  296 ccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttagaaatgtttcatctcttgttaaaattttatttcatat 395  Q
    |||| ||||||||||| |  ||||| |||||| ||||||||  ||||||||||||||||| |||||||| |||  |||||| |||| ||  ||| |||||    
T  25985241 ccaatatatttaaaccgtgtaacttgtggtatgatatgatc--caactttcacctctaagctagaaatgcttcgcctcttgctaaacttacattccatat 25985144  T
Q  396 actttgtctt 405  Q
    ||| ||||||    
T  25985143 actctgtctt 25985134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 15215849 - 15215906
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 351  Q
    |||||| ||||||||||| |  |||||| ||||| |||||||||||||||||||||||    
T  15215849 acccaatatatttaaaccgtgtaactttgggtatgatatgatctccaactttcacctc 15215906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Original strand, 12492421 - 12492487
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  12492421 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtaga 12492487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Original strand, 36565820 - 36565886
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  36565820 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtaga 36565886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 364
Target Start/End: Complemental strand, 35094870 - 35094837
Alignment:
Q  331 atgatctccaactttcacctctaagttagaaatg 364  Q
    ||||||||||||||||||||| ||||||||||||    
T  35094870 atgatctccaactttcacctccaagttagaaatg 35094837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 362
Target Start/End: Complemental strand, 3285164 - 3285124
Alignment:
Q  322 tggtataatatgatctccaactttcacctctaagttagaaa 362  Q
    |||||| ||||||||||||||||||||||||| | ||||||    
T  3285164 tggtatgatatgatctccaactttcacctctacgctagaaa 3285124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 405
Target Start/End: Original strand, 6368526 - 6368615
Alignment:
Q  316 aacttttggtataatatgatctccaactttcacctctaagttagaaatgtttcatctcttgttaaaattttatttcatatactttgtctt 405  Q
    ||||| ||||||  ||||||||||| ||||||||||||  |||||||||||||| |||||| |||||||  | | ||||||| |||||||    
T  6368526 aacttgtggtatgttatgatctccatctttcacctctacattagaaatgtttcacctcttgctaaaattacaatccatataccttgtctt 6368615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 2076053 - 2076120
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttagaa 361  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| |||||    
T  2076053 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagaa 2076120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 20318694 - 20318627
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttagaa 361  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| |||||    
T  20318694 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagaa 20318627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 3301552 - 3301486
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  3301552 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtaga 3301486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 3394413 - 3394347
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  3394413 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtaga 3394347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Original strand, 28977436 - 28977502
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |   ||||  ||||| ||||||||||||||||||||||||||| ||||    
T  28977436 acccaagatatttaaaccgtgtgacttggggtatgatatgatctccaactttcacctctaaggtaga 28977502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 37124265 - 37124204
Alignment:
Q  302 tatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttagaaat 363  Q
    ||||||||| ||  ||||| | |||| || |||||||||||||||||||||||| |||||||    
T  37124265 tatttaaacaatgtaacttgttgtatgatttgatctccaactttcacctctaaggtagaaat 37124204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 362
Target Start/End: Complemental strand, 3096889 - 3096817
Alignment:
Q  290 ataaacccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttagaaa 362  Q
    |||||||||| |||||||||||||  ||||| || |   |||||||||| |||||||||||||| | ||||||    
T  3096889 ataaacccaagatatttaaaccatgtaacttgtgctgagatatgatctctaactttcacctctacgatagaaa 3096817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 10775998 - 10776058
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaa 354  Q
    |||||| |||||||||||||  ||||| |||||| |||||||||||||||||| |||||||    
T  10775998 acccaagatatttaaaccatgtaacttgtggtatgatatgatctccaactttcccctctaa 10776058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 435932 - 435866
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  435932 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtaga 435866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Original strand, 23906880 - 23906946
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  23906880 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtaga 23906946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 30807292 - 30807242
Alignment:
Q  303 atttaaaccatacaacttttggtataatatgatctccaactttcacctcta 353  Q
    ||||||||| |  ||||| |||||| |||||||||||||||||||||||||    
T  30807292 atttaaaccgtgtaacttgtggtatgatatgatctccaactttcacctcta 30807242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 33226912 - 33226846
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  33226912 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtaga 33226846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 39708160 - 39708094
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| |||||||||||  | |||||  ||||||||||||||||||| ||||||||| ||| ||||    
T  39708160 acccaagatatttaaaccgcataacttgaggtataatatgatctccaaatttcacctccaagataga 39708094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 368
Target Start/End: Complemental strand, 43562367 - 43562329
Alignment:
Q  330 tatgatctccaactttcacctctaagttagaaatgtttc 368  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  43562367 tatgatcttcaattttcacctctaagttagaaatgtttc 43562329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Original strand, 48174672 - 48174738
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  48174672 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtaga 48174738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 17667907 - 17667966
Alignment:
Q  293 aacccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaag 355  Q
    ||||||| |||||||||| ||| |||||   |||| ||||||| |||||||||||||||||||    
T  17667907 aacccaatatatttaaactatataactt---gtatgatatgatatccaactttcacctctaag 17667966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 405
Target Start/End: Complemental strand, 28528289 - 28528173
Alignment:
Q  289 cataaacccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttagaaatgtttcatctcttgttaaaattttat 388  Q
    |||| |||||| ||||||||||  |  ||||| ||||||  |||||||||||||||||||||||| | |||||| | |||  |||||| ||||| | |||    
T  28528289 catagacccaagatatttaaactgtgtaacttgtggtatgctatgatctccaactttcacctctaggctagaaacgcttcgcctcttgctaaaactatat 28528190  T
Q  389 ttcatatactttgtctt 405  Q
      |||||||||||||||    
T  28528189 cccatatactttgtctt 28528173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 375
Target Start/End: Complemental strand, 6640822 - 6640748
Alignment:
Q  301 atatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttagaaatgtttcatctctt 375  Q
    ||||||||||| |  ||||| |||| |||||||||||| ||||||||||||||   |||||| ||||||||||||    
T  6640822 atatttaaaccgtgtaacttgtggtgtaatatgatctctaactttcacctctacactagaaacgtttcatctctt 6640748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 8671623 - 8671557
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  8671623 acccaagatatttaaaccgtgtaacttagggtatgatatgatctccaactttcacctccaaggtaga 8671557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 51601761 - 51601695
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  51601761 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtaga 51601695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 405
Target Start/End: Original strand, 16273438 - 16273519
Alignment:
Q  324 gtataatatgatctccaactttcacctctaagttagaaatgtttcatctcttgttaaaattttatttcatatactttgtctt 405  Q
    |||| ||||||||||||||||||| ||||||| |  || | |||||||| ||||| |||||  ||| |||||||| ||||||    
T  16273438 gtatgatatgatctccaactttcatctctaaggtcaaactatttcatcttttgttgaaattacattacatatactatgtctt 16273519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 40419362 - 40419314
Alignment:
Q  316 aacttttggtataatatgatctccaactttcacctctaagttagaaatg 364  Q
    ||||| |||||| |||||||||||||||||||||| || | ||||||||    
T  40419362 aacttgtggtatgatatgatctccaactttcacctttacgctagaaatg 40419314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 43240962 - 43241026
Alignment:
Q  296 ccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  43240962 ccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtaga 43241026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 52442825 - 52442909
Alignment:
Q  52 gtctaatcttactataaatcgaacacaacttcctcatatctactatgcttaatttatgtttgtgctgattgtttaccaccaaaca 136  Q
    ||||| |||||| | | ||| |||||||| ||||||| ||| ||| ||||||||||| |||||| || ||  |||||||||||||    
T  52442825 gtctagtcttaccacacatccaacacaacatcctcatgtctgctacgcttaatttatttttgtgttgtttcattaccaccaaaca 52442909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 360
Target Start/End: Original strand, 11992685 - 11992751
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||||||| ||||    
T  11992685 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctctaaggtaga 11992751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 414
Target Start/End: Complemental strand, 26433884 - 26433786
Alignment:
Q  316 aacttttggtataatatgatctccaactttcacctctaagttagaaatgtttcatctcttgttaaaattttatttcatatactttgtctttttctactt 414  Q
    ||||| |||||| | ||||||||||||||||| ||||||||||||||| ||  | || ||  || ||||| ||| ||||||||||||||  ||||||||    
T  26433884 aacttgtggtatgacatgatctccaactttcatctctaagttagaaatattaaacctttttctacaatttcattccatatactttgtctgcttctactt 26433786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 2610231 - 2610165
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  2610231 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtaga 2610165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 8180483 - 8180417
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||||||||||||||| |  |||||   |||| ||||||||||||||||||||||| ||| ||||    
T  8180483 acccaaaatatttaaaccgtgtaacttggagtatgatatgatctccaactttcacctccaaggtaga 8180417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 362
Target Start/End: Complemental strand, 28317414 - 28317381
Alignment:
Q  329 atatgatctccaactttcacctctaagttagaaa 362  Q
    ||||||||||||||||||||||||||| ||||||    
T  28317414 atatgatctccaactttcacctctaagctagaaa 28317381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 12177 - 12232
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacc 349  Q
    |||||| |||||||||||||  |||||  ||||| |||||||||||||||||||||    
T  12177 acccaagatatttaaaccatgtaacttggggtatgatatgatctccaactttcacc 12232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 32630310 - 32630244
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  32630310 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtaga 32630244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Original strand, 46356430 - 46356496
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  46356430 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtaga 46356496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 405
Target Start/End: Complemental strand, 32484168 - 32484079
Alignment:
Q  316 aacttttggtataatatgatctccaactttcacctctaagttagaaatgtttcatctcttgttaaaattttatttcatatactttgtctt 405  Q
    ||||| |||||| ||||||| |  |||| |||| |||||| ||||||||||||  |||||| |||||||  ||| || ||||||||||||    
T  32484168 aacttgtggtatgatatgatatttaactctcacatctaagatagaaatgtttctcctcttgataaaattacattccacatactttgtctt 32484079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 33737943 - 33737980
Alignment:
Q  327 taatatgatctccaactttcacctctaagttagaaatg 364  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  33737943 taatatgttctcaaactttcacctctaagttagaaatg 33737980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Original strand, 10100436 - 10100502
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttaga 360  Q
    |||||| ||||||||||| |  |||||  ||||| ||||||||||||||||||||||| ||| ||||    
T  10100436 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtaga 10100502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 20428215 - 20428272
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 351  Q
    |||||| |||||||||||    ||||| |||||| |||||||||||||||||||||||    
T  20428215 acccaatatatttaaaccgcgtaacttgtggtatgatatgatctccaactttcacctc 20428272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 2849 - 2906
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 351  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  2849 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 2906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 5895 - 5838
Alignment:
Q  294 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 351  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  5895 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 5838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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