View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9757_low_6 (Length: 436)
Name: NF9757_low_6
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9757_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 36276932 - 36277357
Alignment:
| Q |
1 |
attaggtagctggttttccacttggaacaagaacataaaactagattaattgccacgaacaacttggttacaaactaggacaaaaaccaaactataagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36276932 |
attaggtagctggttttccacttggaacaagaacataaaactagattaattgccacgaacaacttggttacaaactaggacaaaaaccaaactataagag |
36277031 |
T |
|
| Q |
101 |
cacgattatgaaagcaagactgcaactttgaagaaagtgtccccctccaaaaaacacccttaatagctaaacttattttgtgcaactttagctataaata |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36277032 |
cacaattatgaaagcaagactgcaactttgaagaaagtgtccccctccaaaaaacaccctaaatagctaaacttattttgtgcaactttagctataaata |
36277131 |
T |
|
| Q |
201 |
gcattagcacgtacaatcacttttagtttatggttttaatcaatttcaacgtcttctggcagctgtttctctttgtgcattgnnnnnnncagcagccaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36277132 |
gcattagcacgtacaatcacttttagtttatggttttaatcaatttcaacgtcttctggcagctgtttctctttgtgcattgaaaaaaacagcagccaca |
36277231 |
T |
|
| Q |
301 |
ggaggcccgaggtcattgtcttgtgcaaatttccttgtgttaaagagatctcttgatgttggtattttcatcactgtctgtctgcgcttctgcttgtaaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36277232 |
ggaggcccgaggtcattgtcttgtgcaaatttctttgtgttaaagagatctcttgatgttggtattttcatcactgtctgtctgcgcttctgcttgtaaa |
36277331 |
T |
|
| Q |
401 |
gaaggaacacaaacctatggattcct |
426 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
36277332 |
gaaggaacacaaacctatggattcct |
36277357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University