View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9758_high_10 (Length: 322)

Name: NF9758_high_10
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9758_high_10
NF9758_high_10
[»] chr6 (1 HSPs)
chr6 (11-304)||(30737330-30737616)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 30737616 - 30737330
Alignment:
Q  11 cacagacatgacttattatgcttgggtcaaggcataatttaacatg-atgtatataaaacatctatgatgcttcttttgtattggaggcttccaatagat 109  Q
    |||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30737616 cacagacatgacttattatgcttgagtcaaggcataagttaacatggatgtatataaaacatctatgatacttcttttgtattggaggcttccaatagat 30737517  T
Q  110 tttgtgtccttgcttcaatgatgaattcattgcatagtgtttacatcgagagatgtaagttggctcggatgtatttaaaacattcgagaccaggcatttt 209  Q
    || ||||||||||||||| |||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||    
T  30737516 ttcgtgtccttgcttcaaggatgaattcattccatagtgtttacat--------gtaagttggctcggatgtatttaaaacattcgagaccaggcatttt 30737425  T
Q  210 tctacaaatgctcgacttggtttttactgaattaaaccaatgatggggtagaggaaccttgatcttcccttcattattgaattagaggaacaatt 304  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30737424 tctacaaatgctcgacttggtttttcctgaattaaaccaatgatggggtagaggaaccttgatcttcccttcattattgaattagaggaacaatt 30737330  T

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