View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9758_high_12 (Length: 259)
Name: NF9758_high_12
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 32932925 - 32932682
Alignment:
| Q |
1 |
aggagtctatacatcattgatagataataatgtacatcacattcaattattttccctcctctcctctgaaatcaattgtttgagcatccaattccatctg |
100 |
Q |
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| T |
32932925 |
aggagtctatgcattattgatagaacataatgtacatcacattcaattattttccctcctctcctttgaaatcaattgtttgagcatccaattccatctg |
32932826 |
T |
|
| Q |
101 |
gaatcctgcatgaactttaatgtacaagagcttatgttcta-tggcaagttatggctattggtggccgtggctaggacattgttccatttttcgacgtgc |
199 |
Q |
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| T |
32932825 |
gaatcctgcatgaactttaatgtacaagaccttatgttctactggcaagttatggctattggtggccgtggctaggacattgttccatttttcgacgtgc |
32932726 |
T |
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| Q |
200 |
ccttttttggttgacttgaaatgtgtcgggttaagggtggttta |
243 |
Q |
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| T |
32932725 |
ccttttttggttgacttgaaatgtgtcgggttaagggtggttta |
32932682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 32921498 - 32921398
Alignment:
| Q |
142 |
tggcaagttatggct-attggtggccgtggctaggacattgttccatttttcgacgtgcccttttttggttgacttgaaatgtgtcgggttaagggtggt |
240 |
Q |
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| T |
32921498 |
tggcaagttatggcttactggtggccatggctaggacattgttgcatttttcgacgtgctc-tttttggttgacttcaaatgtgtccggtcaagggcggt |
32921400 |
T |
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| Q |
241 |
tt |
242 |
Q |
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|| |
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| T |
32921399 |
tt |
32921398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 32921785 - 32921730
Alignment:
| Q |
2 |
ggagtctatacatcattgatagataataatgtacatcacattcaattattttccct |
57 |
Q |
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||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
32921785 |
ggagtctatacattattgacagataataatgtacatgacattcaattattttccct |
32921730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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