View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9758_high_15 (Length: 242)
Name: NF9758_high_15
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1033762 - 1033984
Alignment:
| Q |
1 |
ttacaattgtaaaggaagagaaaaccaatgttgttaagatcagtgattgggtgcctgaaattgagcctataagagttctgagcagaagacattaatcatc |
100 |
Q |
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| T |
1033762 |
ttacaattgtaaaggaagagaaaaccaatgttgttaagatcagtgatcgggtgcctgaaattgaacctataagagttctgagcagaagacattaatcatc |
1033861 |
T |
|
| Q |
101 |
agcgagtgactctcaaaagcaagaactaattttagatacagactgaatttcacatcaatgttgaccttgctgagcttggggtgtctattattgatcatat |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1033862 |
agcgagtgactctcaaaagcaacaactaattttagatacagactgaatttcacatcaatgttgaccttgctgagcttggggtgtctattattgatcatat |
1033961 |
T |
|
| Q |
201 |
accagaagaaattttgtgcctgt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
1033962 |
accagaagaaattttgtgcctgt |
1033984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 50832312 - 50832088
Alignment:
| Q |
1 |
ttacaattgtaaaggaagagaaaaccaatgttgttaagatcagtgattgggtgcctgaaattgagcctataagagttctgagcagaagacattaatcatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||| || ||| |
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| T |
50832312 |
ttacaattgtaaaggaagagaaaaccaatgttgttaagatcagtgattggatgcctgaaattgaacctattagagttctgagcagaagacattcattatc |
50832213 |
T |
|
| Q |
101 |
agcgagtgactctcaaaagcaagaactaattttagatacagac--tgaatttcacatcaatgttgaccttgctgagcttggggtgtctattattgatcat |
198 |
Q |
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|| | |||||||||||||||| ||||||| | |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
50832212 |
agtaaatgactctcaaaagcaacaactaatgtcagatacagactttgagtttcacatcaatgttgatcttgctgagcttggggtgtctattattgaccat |
50832113 |
T |
|
| Q |
199 |
ataccagaagaaattttgtgcctgt |
223 |
Q |
| |
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| ||| ||||||||||||| ||||| |
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| T |
50832112 |
acaccggaagaaattttgtacctgt |
50832088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 4516329 - 4516411
Alignment:
| Q |
69 |
ataagagttctgagcagaagacattaatcatcagcgagtgactctcaaaagcaagaactaattttagatacagactgaatttc |
151 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
4516329 |
ataagagttctgagcagaagacattcatcatcagcgaatgactctcaaaagcaacaactaattttagatacagactgagtttc |
4516411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 4516302 - 4516330
Alignment:
| Q |
1 |
ttacaattgtaaaggaagagaaaaccaat |
29 |
Q |
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| T |
4516302 |
ttacaattgtaaaggaagagaaaaccaat |
4516330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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