View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9758_high_16 (Length: 241)
Name: NF9758_high_16
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 14437286 - 14437520
Alignment:
| Q |
3 |
gatataaacttaaagtatgactagttcattttgtaatgaagaaatagaacctatatatagacattactttgctcgtcttgcacttcgagaacacaacccc |
102 |
Q |
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| T |
14437286 |
gatataaacttaaagtatgactagttcattttgtaatgaagaaatagaacctatatataggcattactttgctcgtcttgcacttcgagaacacaacccc |
14437385 |
T |
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| Q |
103 |
ataacctacaatacttgtcaagcaagaaagtaaacaaacatagaaaccatattacttgtcttgcactaaaagaaacaacgttacagcctacaagacttgt |
202 |
Q |
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| T |
14437386 |
atagcctacaatacttgtcaagcaagaaagtaaacaaacatagaaaccatattacttgtcttgcactaaaagaaacaacgttacaacctacaagacttgt |
14437485 |
T |
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| Q |
203 |
caaacaagaaagtatacaagcgaatgagtctcctt |
237 |
Q |
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| T |
14437486 |
caaacaagaaagtatacaagcgaatgagtctcctt |
14437520 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 16388449 - 16388389
Alignment:
| Q |
33 |
ttgtaatgaagaaatagaacctatatatagacattactttgctcgtcttgcacttcgagaa |
93 |
Q |
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|||||| ||||||||| | ||||||||||||||| || |||| |||||||||||| |||| |
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| T |
16388449 |
ttgtaacgaagaaataaagcctatatatagacatcacgctgcttgtcttgcacttcaagaa |
16388389 |
T |
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