View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9758_high_2 (Length: 456)

Name: NF9758_high_2
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9758_high_2
NF9758_high_2
[»] chr3 (8 HSPs)
chr3 (7-440)||(25084923-25085354)
chr3 (119-440)||(31825533-31825854)
chr3 (102-440)||(24923419-24923757)
chr3 (128-436)||(24981935-24982243)
chr3 (18-436)||(24919747-24920179)
chr3 (118-436)||(24497234-24497552)
chr3 (128-440)||(21584582-21584894)
chr3 (124-165)||(14858629-14858670)
[»] chr7 (4 HSPs)
chr7 (131-439)||(10575273-10575581)
chr7 (136-440)||(39954838-39955142)
chr7 (183-413)||(354316-354547)
chr7 (219-352)||(10580760-10580893)
[»] chr8 (1 HSPs)
chr8 (128-440)||(14261017-14261329)
[»] chr2 (1 HSPs)
chr2 (159-352)||(41027545-41027738)
[»] chr4 (3 HSPs)
chr4 (136-427)||(53328612-53328903)
chr4 (147-373)||(22898505-22898731)
chr4 (147-373)||(22950173-22950399)
[»] chr5 (1 HSPs)
chr5 (144-307)||(26358549-26358712)


Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 440
Target Start/End: Complemental strand, 25085354 - 25084923
Alignment:
Q  7 cgatctaattcagaatcaattgtcacatattaccctaaacatcaatgaagctttctaatgtgcaattgcaagtctaaggcaaaagaaaataacatataaa 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  25085354 cgatctaattgagaatcaattgtcacatattaccctaaacatcaatgaagctttctaatgtgcaattacaagtctaaggcaaaagaaaataacaaataaa 25085255  T
Q  107 ctaaagagtgtttcttctttgtcttcttcaacctccgaaaccgtagagggttcttccttgtctcttcaaagcatagacaacatccatcgcggtaactgtc 206  Q
    ||||||||||||||||||  |||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| || || || |||    
T  25085254 ctaaagagtgtttcttct--gtcttcttcaacctccaaaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtc 25085157  T
Q  207 ttcctcctagcgtgctcagtgtatgtaaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactga 306  Q
    |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25085156 ttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactga 25085057  T
Q  307 tcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctcc 406  Q
    | |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || || ||||| ||||| ||||| |||||||||||    
T  25085056 ttctcttcacaccacctcttctcgccaatctacgaatggcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctcc 25084957  T
Q  407 ctttcctagccccttacctcccttaccacgacct 440  Q
    |||||| |  |||||||||||||| |||||||||    
T  25084956 ctttcccaatcccttacctccctttccacgacct 25084923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 119 - 440
Target Start/End: Original strand, 31825533 - 31825854
Alignment:
Q  119 tcttctttgtcttcttcaacctccgaaaccgtagagggttcttccttgtctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcg 218  Q
    |||||||  ||||| |||||||||||| || |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31825533 tcttcttcttcttcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcg 31825632  T
Q  219 tgctcagtgtatgtaaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgatcctcttcacac 318  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31825633 tgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacac 31825732  T
Q  319 cacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31825733 cacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccc 31825832  T
Q  419 cttacctcccttaccacgacct 440  Q
    ||||||||||||||||||||||    
T  31825833 cttacctcccttaccacgacct 31825854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 102 - 440
Target Start/End: Original strand, 24923419 - 24923757
Alignment:
Q  102 ataaactaaagagtgtttcttctttgtcttcttcaacctccgaaaccgtagagggttcttccttgtctcttcaaagcatagacaacatccatcgcggtaa 201  Q
    ||||||||||||||||||||||||  | ||||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||| || || |    
T  24923419 ataaactaaagagtgtttcttcttcatattcttcaacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtca 24923518  T
Q  202 ctgtcttcctcctagcgtgctcagtgtatgtaaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaacc 301  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24923519 ctgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaacc 24923618  T
Q  302 actgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgca 401  Q
    |||||| ||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || || ||||| ||||| ||||| ||||||    
T  24923619 actgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgca 24923718  T
Q  402 cctccctttcctagccccttacctcccttaccacgacct 440  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  24923719 cctccctttccgagtcccttacctcccttaccacgacct 24923757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 128 - 436
Target Start/End: Complemental strand, 24982243 - 24981935
Alignment:
Q  128 tcttcttcaacctccgaaaccgtagagggttcttccttgtctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtg 227  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  24982243 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg 24982144  T
Q  228 tatgtaaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgatcctcttcacaccacctcttc 327  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  24982143 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctcttc 24982044  T
Q  328 tcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcc 427  Q
    | |||||||||||||| |||||||| ||||||||||||||||| || || |||||||| || ||||| |||||||||||||||||||| |||||||||||    
T  24982043 ttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctccctttcctagtcccttacctcc 24981944  T
Q  428 cttaccacg 436  Q
     || |||||    
T  24981943 ttttccacg 24981935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 24919747 - 24920179
Alignment:
Q  18 agaatcaattgtcacatattaccctaaacatcaatgaagctttctaatgtgcaattgca------------agtctaaggcaaaagaaaataacatataa 105  Q
    ||||||| || | |||||||||||||||||||| |||| |||||||| |||||||||||            |||||||||||||| ||||||| | ||||    
T  24919747 agaatcacttataacatattaccctaaacatcattgaaactttctaaggtgcaattgcatattcaaattaaagtctaaggcaaaataaaataaaaaataa 24919846  T
Q  106 actaaagagtgtttcttctttgtcttct---tcaacctccgaaaccgtagagggttcttccttgtctcttcaaagcatagacaacatccatcgcggtaac 202  Q
    |||||| |||| ||||||||  |||||    |||||||||||| || |||||||||||||| || ||||||||||||||||| |||||||| || || ||    
T  24919847 actaaa-agtgcttcttcttcatcttcagcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcac 24919945  T
Q  203 tgtcttcctcctagcgtgctcagtgtatgtaaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaacca 302  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  24919946 tgtcttcctcctagcgtgctcagtgtatgtcacagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccg 24920045  T
Q  303 ctgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcac 402  Q
    ||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || || |||||||| || ||||| |||||||    
T  24920046 ctgattctcttcacaccacctcttcttgccaatcgacgaattgcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcac 24920145  T
Q  403 ctccctttcctagccccttacctcccttaccacg 436  Q
    |||||||||| |  |||||||||||||| |||||    
T  24920146 ctccctttcccaatcccttacctccctttccacg 24920179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 118 - 436
Target Start/End: Original strand, 24497234 - 24497552
Alignment:
Q  118 ttcttctttgtcttcttcaacctccgaaaccgtagagggttcttccttgtctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagc 217  Q
    ||||| ||| ||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || || || ||||||||||| ||    
T  24497234 ttcttgtttttcttcatcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgc 24497333  T
Q  218 gtgctcagtgtatgtaaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgatcctcttcaca 317  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||    
T  24497334 gtgctcagtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaaca 24497433  T
Q  318 ccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagcc 417  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| || ||||| || || ||||| ||||||||||||||||| || |    
T  24497434 ccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttgtcacgaagaaccttcctatgcctctttgcacctccctttccgagtc 24497533  T
Q  418 ccttacctcccttaccacg 436  Q
    ||||||||||||| |||||    
T  24497534 ccttacctccctttccacg 24497552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 128 - 440
Target Start/End: Original strand, 21584582 - 21584894
Alignment:
Q  128 tcttcttcaacctccgaaaccgtagagggttcttccttgtctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtg 227  Q
    |||||||||||||||||| || || || ||||||||||| |||||||||||||| ||||||||||| || || || ||||||||||| || |||||||||    
T  21584582 tcttcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtg 21584681  T
Q  228 tatgtaaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgatcctcttcacaccacctcttc 327  Q
    || |||||||||||||| || |||||||||||||| ||||| |  || ||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||    
T  21584682 tacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttc 21584781  T
Q  328 tcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcc 427  Q
    |||||||||||||||| || ||||| ||||| ||||| ||||| || || |||||||| ||||| || |||||||||||||||||||| |||||||||||    
T  21584782 tcgccaatcgacgaatcgctggcttggtgattccctgaatgttatcacgaagaactttcctgtgtctctttgcacctccctttcctagtcccttacctcc 21584881  T
Q  428 cttaccacgacct 440  Q
    ||| |||||||||    
T  21584882 ctttccacgacct 21584894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 14858629 - 14858670
Alignment:
Q  124 tttgtcttcttcaacctccgaaaccgtagagggttcttcctt 165  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  14858629 tttgtcttcttcaaccaccaaaaccgtagagggttcttcctt 14858670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 131 - 439
Target Start/End: Complemental strand, 10575581 - 10575273
Alignment:
Q  131 tcttcaacctccgaaaccgtagagggttcttccttgtctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtat 230  Q
    ||||||||| |||||||| ||||||||||||||||||||||| |  || || ||||||||||| || || || || |||||||| || |||||||||||     
T  10575581 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaa 10575482  T
Q  231 gtaaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcg 330  Q
    ||||| ||||| |  || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||| || |||||||| ||||||||||    
T  10575481 gtaacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctcg 10575382  T
Q  331 ccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctccctt 430  Q
    ||||||||||||| || ||||| ||||| || ||||||||||| |||||||| || |  || || |||||||| ||||||||||  || |||||||||||    
T  10575381 ccaatcgacgaatcgctggctttgtgattccttggatgttgtcacggagaaccttgcgatgtctctttgcacccccctttcctaatcctttacctccctt 10575282  T
Q  431 accacgacc 439  Q
     ||||||||    
T  10575281 tccacgacc 10575273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 136 - 440
Target Start/End: Original strand, 39954838 - 39955142
Alignment:
Q  136 aacctccgaaaccgtagagggttcttccttgtctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtaac 235  Q
    |||| |||||||||||||| || ||||| || ||||| | |||||| ||||||||||| |||||||| || ||||||||||| ||||||||||| |||||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T
Q  236 cgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaat 335  Q
     |||||||| || |||||||| |  |||||||| |  ||||| |  || ||||| ||||| | ||| ||||| |||||||||||||| |  || || |      
T  39954938 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccaccacgccttgcaaga 39955037  T
Q  336 cgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccac 435  Q
    |||||||| |||||||| || || || |||||||||||||| ||||| ||||||||||| ||||| ||||||||||| |  ||||| ||||| || ||||    
T  39955038 cgacgaatcgcaggcttggttatgccttggatgttgtcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccac 39955137  T
Q  436 gacct 440  Q
    |||||    
T  39955138 gacct 39955142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 183 - 413
Target Start/End: Complemental strand, 354547 - 354316
Alignment:
Q  183 acaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtaaccgcatcacggatgacattctccaagaagatcttcaagacacctctgg 282  Q
    ||||||||||| || || |  ||||||||||| || ||||||||||| ||||| |||||||  ||  |||||| |||||| |||||||| || |||||      
T  354547 acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 354448  T
Q  283 tttcttcatagatcaaa-ccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaa 381  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||| || ||||| || || || || |||||  |||  ||||    
T  354447 tttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaa 354348  T
Q  382 cttttctgtgcctttttgcacctccctttcct 413  Q
    | || || || |  ||||||||||||||||||    
T  354347 ccttgctatgtcactttgcacctccctttcct 354316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 219 - 352
Target Start/End: Complemental strand, 10580893 - 10580760
Alignment:
Q  219 tgctcagtgtatgtaaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgatcctcttcacac 318  Q
    ||||||||||| ||||| |||||| | ||   ||||| |||||| |||||||| |  |||||  |||| |||||||||||||||||||||||||||||||    
T  10580893 tgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctcttatttcctcatagatcaaaccactgatcctcttcacac 10580794  T
Q  319 cacctcttctcgccaatcgacgaatggcaggctt 352  Q
    || ||||||||||||||| |||||| || |||||    
T  10580793 caactcttctcgccaatctacgaatcgctggctt 10580760  T

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Target: chr8 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 128 - 440
Target Start/End: Original strand, 14261017 - 14261329
Alignment:
Q  128 tcttcttcaacctccgaaaccgtagagggttcttccttgtctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtg 227  Q
    ||||||||||||||||||||| || |  || ||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || || |||||     
T  14261017 tcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagta 14261116  T
Q  228 tatgtaaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgatcctcttcacaccacctcttc 327  Q
    || ||||| ||||| |  || |||||||||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||| ||||||||||| |||||||    
T  14261117 tacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttc 14261216  T
Q  328 tcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcc 427  Q
    |||| ||||| ||||| || ||||| ||||| || ||||||||||| || || ||||| |  || || |||||||||||||||||||  |||||||||||    
T  14261217 tcgctaatcgccgaatcgctggctttgtgattccttggatgttgtcacgaagcactttgcgatgtctctttgcacctccctttcctaatcccttacctcc 14261316  T
Q  428 cttaccacgacct 440  Q
    ||| |||||||||    
T  14261317 ctttccacgacct 14261329  T

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Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 159 - 352
Target Start/End: Complemental strand, 41027738 - 41027545
Alignment:
Q  159 cttccttgtctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtaaccgcatcacggatgacattctcca 258  Q
    ||||||||||||||||| ||||| ||||||||||| || ||||| ||||| |||||||||||||| ||||| ||||| |||||||| || ||||||||||    
T  41027738 cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctcca 41027639  T
Q  259 agaagatcttcaagacacctctggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggctt 352  Q
    | ||||||||||| || || |  || ||||| ||||||||||| || || | |||||| || ||||| |  ||||| |||||||| ||||||||    
T  41027638 aaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggctt 41027545  T

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Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 136 - 427
Target Start/End: Complemental strand, 53328903 - 53328612
Alignment:
Q  136 aacctccgaaaccgtagagggttcttccttgtctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtaac 235  Q
    |||| ||||||||||| || || ||||| || ||||| | ||| || ||||||||||| || ||||| ||||| |  | ||| ||||| |||||||| ||    
T  53328903 aacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgac 53328804  T
Q  236 cgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaat 335  Q
     |||||||| || |||||||| |  |||||||| |  || || |  |||||||||||||| || |||||||| | |||||||||||| | ||| || |      
T  53328803 agcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgaga 53328704  T
Q  336 cgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcc 427  Q
    |||||||| |||||||| ||||| ||||||||||| ||||| ||||| || | ||| | ||| || || ||||||||||  ||||| |||||    
T  53328703 cgacgaatcgcaggctttgtgattccctggatgttatcgcgcagaaccttacggtgtcgtttcgctccaccctttcctaaaccctttcctcc 53328612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 373
Target Start/End: Complemental strand, 22898731 - 22898505
Alignment:
Q  147 ccgtagagggttcttccttgtctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtaaccgcatcacgga 246  Q
    ||||| ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| ||||||||||||||||| || || ||||| |  |    
T  22898731 ccgtaaagggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaa 22898632  T
Q  247 tgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggc 346  Q
    | ||||||||||| || |||||||| || || |  || || ||||| |||||||||||||| | |||||| || ||||| |  || |  |||||||| ||    
T  22898631 tcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgc 22898532  T
Q  347 aggcttagtgataccctggatgttgtc 373  Q
     ||||| || || ||||||||||||||    
T  22898531 tggctttgttattccctggatgttgtc 22898505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 373
Target Start/End: Complemental strand, 22950399 - 22950173
Alignment:
Q  147 ccgtagagggttcttccttgtctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtaaccgcatcacgga 246  Q
    ||||| ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| ||||||||||||||||| || || ||||| |  |    
T  22950399 ccgtaaagggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaa 22950300  T
Q  247 tgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggc 346  Q
    | ||||||||||| || |||||||| || || |  || || ||||| |||||||||||||| | |||||| || ||||| |  || |  |||||||| ||    
T  22950299 tcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgc 22950200  T
Q  347 aggcttagtgataccctggatgttgtc 373  Q
     ||||| || || ||||||||||||||    
T  22950199 tggctttgttattccctggatgttgtc 22950173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 307
Target Start/End: Original strand, 26358549 - 26358712
Alignment:
Q  144 aaaccgtagagggttcttccttgtctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtaaccgcatcac 243  Q
    ||||| || ||||| |||||||| ||||| |  ||||| ||||||||||| || |||||||| || |  | ||| || |||||||| || || |||||||    
T  26358549 aaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatcac 26358648  T
Q  244 ggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat 307  Q
    | || |||||||| |  || ||||| |  ||||| |  |||||||||||||||| |||||||||    
T  26358649 gaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatcagaccactgat 26358712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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