View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9758_high_20 (Length: 223)
Name: NF9758_high_20
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 66 - 207
Target Start/End: Original strand, 9166372 - 9166513
Alignment:
| Q |
66 |
acggcttctcccaccacctgcgttgctttctttgtcatctaacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatctt |
165 |
Q |
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| T |
9166372 |
acggcttctcccaccacctgcgttgctttctttgtcatctaacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatctt |
9166471 |
T |
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| Q |
166 |
tgatatccatcagcagtctttttcctattattcatcttctct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
9166472 |
tgatatccatcagcagtctttttcctattattcatcttctct |
9166513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 66 - 207
Target Start/End: Original strand, 9154955 - 9155096
Alignment:
| Q |
66 |
acggcttctcccaccacctgcgttgctttctttgtcatctaacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatctt |
165 |
Q |
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||||| ||||||||| ||||||||||| || |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
9154955 |
acggcctctcccaccccctgcgttgctctccttgtcatctaacttcccatgttcaccaaatgcagcaggcccattgtttgctgctttcatcatccatctt |
9155054 |
T |
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| Q |
166 |
tgatatccatcagcagtctttttcctattattcatcttctct |
207 |
Q |
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||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
9155055 |
tgatatccatcagcagtttttttcctatttttcatcttctct |
9155096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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