View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9758_high_4 (Length: 448)
Name: NF9758_high_4
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 7 - 438
Target Start/End: Original strand, 32980158 - 32980577
Alignment:
| Q |
7 |
tttttaatttgatttttgtcttaatgttgaaaaatatttaaattatgatagagagaatagaagatagaaggtggtttctcttatgttgatttagttttaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32980158 |
tttttaatttgatttttgtcttaatgttgaaaaat--ttaaattatgatagagagaatagaagatagaaggtggtttctcttatgttgatgtagttttaa |
32980255 |
T |
|
| Q |
107 |
tctagatgtgtttctttgaatggagaatcaaggtttttgattcatcgtgttgtgttatgtattgaatataacaatgagggaagagtttgtaggtaaatga |
206 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32980256 |
tctagatgtttttctttgaatggagaatcaaggtttttgattcatcgtgttgtgttatgtattgaatataacaatgagggaagagtttgtaggtaaatga |
32980355 |
T |
|
| Q |
207 |
aaaaatgtagttcttattttcaa-aacaatgagggaaggtttttgttaatttaaatttaaggtagctgtttattgttttgtgagtgagtatagtgtatgt |
305 |
Q |
| |
|
||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32980356 |
aaaaatgtagttcttattttcaatttcta-----------ttttgttaatttaaatttaaggtagctgtttattgttttgtgagtgagtatagtgtatgt |
32980444 |
T |
|
| Q |
306 |
ttggttcccgcttttggacaagccaaaattgattctaggtataaaattgattttaacatgttttgttgttctttagtagaagtgattttgctgcagaatt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32980445 |
ttggttcccgcttttggacaagccaaaattgattctaggtataaaattgattttaacatgttttgttgttttttagtagaagtgattttgctgcagaatt |
32980544 |
T |
|
| Q |
406 |
gattttacttgaagttaagactcatatcctttg |
438 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||| |
|
|
| T |
32980545 |
gattttacttgaagttaagatttatatcttttg |
32980577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 32981679 - 32981818
Alignment:
| Q |
72 |
agaaggtggtttctcttatgttgatttagttttaatctagatgtgtttctttgaatggagaatcaaggt----ttttgattcatcgtgttgtgttatgta |
167 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||| ||||||||||| ||||||||||| | | |
|
|
| T |
32981679 |
agaaagtggtttctcttatgttgatttagttttaatctagatgtgtatattttattggagaatcaaggtttgattttgattcatggtgttgtgttacgaa |
32981778 |
T |
|
| Q |
168 |
ttgaatataacaatgagggaagagtttgtaggtaaatgaa |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32981779 |
ttgaagataacaatgagggaagagtttgtaggtaaatgaa |
32981818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 32981819 - 32981876
Alignment:
| Q |
170 |
gaatataacaatgagggaagagtttgtaggtaaatgaaaaaatgtagttcttattttca |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32981819 |
gaatataacaatgagggaagagtttgtaggtaaatg-aaaaatgtagttcttattttca |
32981876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 419
Target Start/End: Original strand, 2635084 - 2635178
Alignment:
| Q |
328 |
ccaaaattgattctag--gtataaaattgattttaacatgttttgttgttctttagtagaagtgattttg-ctgcagaattgattttacttgaag |
419 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| |||||||| ||| | || ||||||| |||||||| || ||||||||||| | ||||||| |
|
|
| T |
2635084 |
ccaaaattgattctagaagtgtaaaattgattttgacatgtttgattgcttttaagtagaactgattttgcctccagaattgattatgcttgaag |
2635178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 419
Target Start/End: Original strand, 578872 - 578945
Alignment:
| Q |
347 |
taaaattgattttaacatgttttgttgttctttagtagaagtgattttgc-tgcagaattgattttacttgaag |
419 |
Q |
| |
|
||||||||||||| |||||||| |||||| || ||||||| | ||||||| || ||||||||| ||||||||| |
|
|
| T |
578872 |
taaaattgattttgacatgtttagttgtttttaagtagaaataattttgcttgtagaattgatactacttgaag |
578945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 12306920 - 12306968
Alignment:
| Q |
348 |
aaaattgattttaacatgttttgttgttctttagtagaagtgattttgc |
396 |
Q |
| |
|
|||||||||||| |||||||| |||| |||| ||||||| ||||||||| |
|
|
| T |
12306920 |
aaaattgattttgacatgtttggttgctcttgagtagaattgattttgc |
12306968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 421
Target Start/End: Original strand, 3352021 - 3352093
Alignment:
| Q |
350 |
aattgattttaacatgttttgttgttctttagtagaagtgattttg-ctgcagaattgattttacttgaagtt |
421 |
Q |
| |
|
|||||||| | |||| |||||||||| || ||||||| |||| ||| || || |||||||||||||||||||| |
|
|
| T |
3352021 |
aattgattctgacattttttgttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagtt |
3352093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 9943344 - 9943391
Alignment:
| Q |
328 |
ccaaaattgattct--aggtataaaattgattttaacatgttttgttg |
373 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||| |||| |
|
|
| T |
9943344 |
ccaaaattgattctgaaggtgtaaaattgattttaacatgtttggttg |
9943391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 421
Target Start/End: Complemental strand, 34387833 - 34387761
Alignment:
| Q |
350 |
aattgattttaacatgttttgttgttctttagtagaagtgattttg-ctgcagaattgattttacttgaagtt |
421 |
Q |
| |
|
|||||||| | |||| |||||||||| || ||||||| |||| ||| || || |||||||||||||||||||| |
|
|
| T |
34387833 |
aattgattctgacattttttgttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagtt |
34387761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University