View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9758_high_7 (Length: 354)
Name: NF9758_high_7
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 15134076 - 15134392
Alignment:
| Q |
19 |
ctcaccccatctatcttcccacaccaacaatttttt-caataaaatctacaacgaattcaccttaaacaaaccactttcttccgacctccacttccaaga |
117 |
Q |
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| T |
15134076 |
ctcaccccatctatcttcccaaaccaacaatttttttcaataaaatctacaac---------------aaaccactttcttccggcctccaattccaaga |
15134160 |
T |
|
| Q |
118 |
acccgattcatgtgaaccagcaaattcgtctaaggcctcgccgtcaaatcattaagtaacctcacctcccacacaaaaagaggtctatgccaagatggaa |
217 |
Q |
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| T |
15134161 |
acccgattcatgtgaacaagcaaatccgtctaaggcctc--cgtcaaatcattaagtaacctcacctcccacacaaaaagaggtctatgccaagatggaa |
15134258 |
T |
|
| Q |
218 |
caaaattcccaaatccattggtcaatatgcacatatattacatatataattataaactttttgctatatgggatatgccttagaacatgtatttcacttc |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15134259 |
caaaattcccaaatccattggtcaatatccacatatattacatatataattataaactctttgctatatgggatatgccttagaacatatatttcacttc |
15134358 |
T |
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| Q |
318 |
actatccctatatgcgggttttaacaccaaactc |
351 |
Q |
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| T |
15134359 |
actatccctatatgcgggctttaacatcaaactc |
15134392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 11915018 - 11915061
Alignment:
| Q |
20 |
tcaccccatctatcttcccacaccaacaattttttcaataaaat |
63 |
Q |
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| T |
11915018 |
tcaccccatctctcttcccacaccatcaatttttccaataaaat |
11915061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 11939303 - 11939260
Alignment:
| Q |
20 |
tcaccccatctatcttcccacaccaacaattttttcaataaaat |
63 |
Q |
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| T |
11939303 |
tcaccccatctctcttcccacaccatcaatttttccaataaaat |
11939260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 29318020 - 29318086
Alignment:
| Q |
46 |
caattttttcaataaaatctacaacgaattcaccttaaacaaaccactttcttccgacctccacttc |
112 |
Q |
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|||||||| |||||||| |||| |||||||||| ||||||||||||||| |||| ||||||||| |
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| T |
29318020 |
caatttttcaaataaaatgtacatcgaattcaccaaaaacaaaccactttcctccggtctccacttc |
29318086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 17746589 - 17746624
Alignment:
| Q |
20 |
tcaccccatctatcttcccacaccaacaattttttc |
55 |
Q |
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| T |
17746589 |
tcaccccatctctcttcccacaccaacaattttttc |
17746624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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