View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9758_high_9 (Length: 338)
Name: NF9758_high_9
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 36759492 - 36759799
Alignment:
| Q |
19 |
atggcatctttttgaaatgcgaaaataacttaatggaaaccaataaagggaatcttttcactcaaagtagctttttggcaccttataaatatactcatca |
118 |
Q |
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| T |
36759492 |
atggcatctgtttgaaatgtgaaaataacttaatggaaaccaataaagggaatcttttcactcaaagtagctttttggcaccttataaata--ctcctca |
36759589 |
T |
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| Q |
119 |
cttctccctctttcactaccatccatcaactacaaccattattcctaacatttgcatcataaaattttaggtctatatctctgttggatgttgttttgct |
218 |
Q |
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| T |
36759590 |
cttctccctctttcactaccatccatcaactacaaccattattcctaacatttgcatcataaaattttaggtctatatctctgttggatgttgttttgct |
36759689 |
T |
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| Q |
219 |
gcctcaggtaattcagtaaattttaattttcaagctttattatgtgtattattttcctttctttctaaacccgcatacattcatgtactagcccaaccat |
318 |
Q |
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| T |
36759690 |
gcctcaggtaattcagtaaattttaattttcaagctttattatgtgtattattttcctttctttctaaacccgcatgcattcatgtactagcccaaccat |
36759789 |
T |
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| Q |
319 |
ataccctttg |
328 |
Q |
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| T |
36759790 |
ataccctttg |
36759799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 36774770 - 36774843
Alignment:
| Q |
83 |
aagtagctttttggcaccttataaatatactcatcacttctccctctttcactaccatccatcaactacaaccatt |
158 |
Q |
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|||||||||||||||||||||||| |||||| ||| |||| | ||||||||||| || |||||| ||||||||| |
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| T |
36774770 |
aagtagctttttggcaccttataa--atactcctcatttcttctactttcactaccttcaatcaaccacaaccatt |
36774843 |
T |
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