View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9758_low_1 (Length: 1127)
Name: NF9758_low_1
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 615; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 122 - 857
Target Start/End: Complemental strand, 1252661 - 1251924
Alignment:
| Q |
122 |
tgtattattttatgaataa-ggttcttccttctatgtactatgggtcat---tgagaatcaaatgcttccatttattgattgttgtgaccagttaagttg |
217 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1252661 |
tgtattattttatgaataaaggttcttccttctatgttctatgggtgataattgagaatcaaatgcttccatttattgattgttgtgaccagttaagttg |
1252562 |
T |
|
| Q |
218 |
ctgcagtcttttaccacctggaacaaccatatgatggtacttggtatcaaagtgcttgtttgactgagttgcattttctgttttgaaataatatactgta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
1252561 |
ctgcagtcttttaccacctggaacaaccatatgatggtacttggtatcaaagtgcttgtttgactgtgttgcattttctgttttgaaataatatactgta |
1252462 |
T |
|
| Q |
318 |
agaatgttcaacctatcttttataagacaaatctttttaagtaaattaaaaaactatatgccaatatcaattgaaaaacatcttttcaaaaattgcttga |
417 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
1252461 |
agaatgttcaacctatcttttacaagacaaatcttg--aagtaaattaaaaaactatatgccaatattaattgaaaaacatctttttaaaaattgcttga |
1252364 |
T |
|
| Q |
418 |
taaacttattttgacatgttttaaagggatgtttgatgataacaatggtnnnnnnnntgacttggacaatgattgcatgtgggaatatgatggtgaaagt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1252363 |
taaacttattttgacatgttttaaagggatgtttgatgataacaatggtaaaaaaaatgacttggacaatgattgcatgtgggaatatgatggtgaaagt |
1252264 |
T |
|
| Q |
518 |
tttctgggtgacgatatgggggagaattattacgacgatcatctgttgaaatcgtccactaggcttacgctgtaagaggagaagttgcagacttgcagtt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1252263 |
tttctgggtgacgatatgggggagaattattacgacgatcatctgttgaaatcgtccactaggcttacgctgtaagaggagaagttgcagacttgcagtt |
1252164 |
T |
|
| Q |
618 |
accgtgatgcacacagtgtcagtgtggcaggagctgaactgctggtaaagcagttgccggcagtacacaggcagtcagtgagagtgtgttgtttgaagct |
717 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| |||||||||| |
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|
| T |
1252163 |
accgcgatgcacacggtgtcagtgtggcaggagctgaactgctggtaaagcagttgccggcagcacacaggcagccagcgagagtgtggagtttgaagct |
1252064 |
T |
|
| Q |
718 |
gccgctggagcacataggaatggtggtggttggcaatatgacactagagattcttttagaaacactgaaagggactttttgaatatgttgtgttcacctc |
817 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
1252063 |
gccgctggagcacataggaatggtggtggttggcaatatgacactagagattcttttagaaacactgcaagggactttttgaatatgttgtgtgcacctc |
1251964 |
T |
|
| Q |
818 |
aaatcttggattaattagcaaatttgaggaacacaaaagc |
857 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1251963 |
aaatcttggattaattagcaagtttgaggaacacaaaagc |
1251924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 857 - 1127
Target Start/End: Complemental strand, 1251797 - 1251527
Alignment:
| Q |
857 |
cacagccaataatattccacaatcagtaaagcacacaaattcacattaacgattgagctcccactcgttccctgcatgtccaataaggattgatctaaat |
956 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1251797 |
cacagccaataatattccacaatcagtaaagcacacaaattcacattaacgattgagctcccactcgttccctgcatgtccaataaggattgatctaaat |
1251698 |
T |
|
| Q |
957 |
aacagcagaagcatcaaaaacatgaagctgatataaatgtaaatatgttaaagcttaagcaaactgacctaaataataataacactgacaaagttgattc |
1056 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1251697 |
aacagcagaagcatcaaaaacatgaagctgatataaatgtaaatatgttaaagcttaagcaaactgacctaaataataataacactgacaaagttgattc |
1251598 |
T |
|
| Q |
1057 |
ctcctatgtcaattgtttgtaacagttataggcgatagtgaccgatacagcagcacagacaacagcaagag |
1127 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1251597 |
ctcctatgtcaattgtttgcagcagttataggcgatagtgaccgatacagcagcacagacaacagcaagag |
1251527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 580; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 53 - 857
Target Start/End: Complemental strand, 42019519 - 42018701
Alignment:
| Q |
53 |
ggtcacatgtctcatcttctctaacattgagttgtttgtcaccacctaatcatgcaaggttccttcctctgtattattttatgaataaggttcttccttc |
152 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42019519 |
ggtcacatgtctcatcttctctaacattgggttgtttgtcaccacctaatcatgcaaagttccttcctctgtattattttatgaataaggttcttccttc |
42019420 |
T |
|
| Q |
153 |
tatgtactatgggtcat---tgagaatcaaatgcttccatttattgattgttgtgaccagttaagttgctgcagtcttttaccacctggaacaaccatat |
249 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
42019419 |
tatgttctatgggtgataattgagaatcaaatgcttccatttattgattgttgtgaccagttaagttgctgcagtcttttaccacttggaacaaccatat |
42019320 |
T |
|
| Q |
250 |
gatggtacttggtatcaaagtgcttgtttgactgagttgcattttctgttttgaaataatatactgtaagaatgttcaacctatcttttataagacaaat |
349 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42019319 |
gatggtacttggtatcaaagtgcttgtt--aatgtgttgcattttctgttttgaaataatatactgtaagaatgttcaacctatcttttataagacaaat |
42019222 |
T |
|
| Q |
350 |
ctttttaagtaaattaaaaaactatatgccaatatcaattgaaaaacatct-------tttcaaaaattgcttgataaacttattttgacatgttttaaa |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
42019221 |
ctttttaagtaaattaaaaaactatatgccaatattaattgaaaaacatctttaaaaattttaaaaattgcttgataaacttattttggcatgttttaaa |
42019122 |
T |
|
| Q |
443 |
gggatgtttgatgataacaatggtnnnnnnnntgacttggacaat----------gattgcatgtgggaatatgatggtgaaagttttctgggtgacgat |
532 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42019121 |
gggatgtttgatgataacaatggtaaaaaaaatgacttggacaatgattgtgaaggattgcatgtgggaatatgatgctgaaagttttctgggtgacgat |
42019022 |
T |
|
| Q |
533 |
atgggggagaattattacgacgatcatctgttgaaatcgtccactaggcttacgctgtaagaggagaagttgcagacttgcagttaccgtgatgcacaca |
632 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42019021 |
atgggggagaattatttcaacgatcatctgttgaaaccgaccactaggcttacgctgtaagagaagaagttgcagacttgcagttaccgcgatgcacacg |
42018922 |
T |
|
| Q |
633 |
gtgtcagtgtggcaggagctgaactgctggtaaagcagttgccggcagtacacaggcagtcagtgagagtgtgttgtttgaagctgccgctggagcacat |
732 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||| ||||||| |||||||||||| |||||||||||| |
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|
| T |
42018921 |
gtgtca-tgtggcaggagctgaactgct-gtaaagcagttgccggcagcacacaggcagccagt--gagtgtggagtttgaagctgctgctggagcacat |
42018826 |
T |
|
| Q |
733 |
aggaatggtggtggttggcaatatgacactagagattcttttagaaacactgaaagggactttttgaatatgttgtgttcacctcaaatcttggattaat |
832 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
42018825 |
aggaatggtggtggttggcaatatgacactagagattctttgagaaacactgcaagggactttttgaatatgttgtgtgcacctcaaatcttggattaat |
42018726 |
T |
|
| Q |
833 |
tagcaaatttgaggaacacaaaagc |
857 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
42018725 |
tagcaagtttgaggaacacaaaagc |
42018701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 857 - 1127
Target Start/End: Complemental strand, 42018577 - 42018307
Alignment:
| Q |
857 |
cacagccaataatattccacaatcagtaaagcacacaaattcacattaacgattgagctcccactcgttccctgcatgtccaataaggattgatctaaat |
956 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42018577 |
cacagccaataatattccacaatcagtaaagcacacaaattcacattaacgattgagctcccactcgttccctgcatgtccaataaggattgatctaaat |
42018478 |
T |
|
| Q |
957 |
aacagcagaagcatcaaaaacatgaagctgatataaatgtaaatatgttaaagcttaagcaaactgacctaaataataataacactgacaaagttgattc |
1056 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42018477 |
aacagcagaagcatcaaaaacatgaagctgatataaatgtaaatatgttaaagcttaagcaaactgacctaaataataataacactgacaaagttgattc |
42018378 |
T |
|
| Q |
1057 |
ctcctatgtcaattgtttgtaacagttataggcgatagtgaccgatacagcagcacagacaacagcaagag |
1127 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42018377 |
ctcctatgtcaattgtttgtagcagttataggcgatagtgaccgatacagcagcacagacaacagcaagag |
42018307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 42024920 - 42024871
Alignment:
| Q |
10 |
gatggacatcttcaagagtcgatgt--taggtgtggttgatatttggtca |
57 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
42024920 |
gatgtacatcttcaagagtcggtgtcttaggtgtggttgatatttggtca |
42024871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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