View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9758_low_12 (Length: 340)
Name: NF9758_low_12
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 41035526 - 41035837
Alignment:
| Q |
12 |
agaggaaaccaaactatatacagtatacactaagtaaaattctacatcagcttttctatcttaacttcaatttgacttaagcctgtccaagttatacact |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41035526 |
agaggaaaccaaactatatacagtatacactaagtaaaattctacatcagcttttctatcttaacttcaatttgacttaagcctgtccaagttatacact |
41035625 |
T |
|
| Q |
112 |
ttctgcaaaataaataaatattcatcaggtaagtatatgacaggaaatccaacgaccatgaccaattgatgttaagtcagaaagcataaaatcaagctta |
211 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41035626 |
ttctgcaaaataaataaatattcatcgggtaagtatatgacaggaaatccaacgaccatgaccaattgatgttaagtcagaaagcataaaatcaagctta |
41035725 |
T |
|
| Q |
212 |
ctagaatacaatggatatcctcaagaaaaggcacaagcaaagaaactaaaatctccattttttccattagggtgttgctgtcttcgtctttttcccggag |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41035726 |
ctagaatacaatggatatcctcaagaaaaggcacaagcaaagaaactaaaatctccattttttccattagggtgttgcagtcttcgtctttttcccggag |
41035825 |
T |
|
| Q |
312 |
gagatccatgaa |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41035826 |
gagatccatgaa |
41035837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 9873179 - 9873123
Alignment:
| Q |
201 |
aatcaagcttactagaatacaatggatatcctcaagaaaaggcacaagcaaagaaac |
257 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||| || |||||| |
|
|
| T |
9873179 |
aatcaagcttactaggatacagtggatatcctcaagaaaaggcacaaacagagaaac |
9873123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 9880282 - 9880210
Alignment:
| Q |
200 |
aaatcaagcttactagaatacaatggatatcctcaagaaaaggcacaagcaaagaaactaaaatctccatttt |
272 |
Q |
| |
|
||||||||||||||| |||||| |||||||| ||||||||||||||||| | |||||| || |||| |||||| |
|
|
| T |
9880282 |
aaatcaagcttactaaaatacagtggatatcttcaagaaaaggcacaagtagagaaaccaatatctgcatttt |
9880210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University