View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9758_low_13 (Length: 339)
Name: NF9758_low_13
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 5 - 339
Target Start/End: Complemental strand, 24165630 - 24165294
Alignment:
| Q |
5 |
gagagagaagaaacagaactggagcagttgaaagctgggaatgctcgaaacatttcagagtctccaaaacgaagagctgtttcaccttaccatttgccca |
104 |
Q |
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| T |
24165630 |
gagagaaaagaaacagaactggagcagttgaaagctgggaatgctcgaaacatttcagagtctccaaaacgaagagctgtttcaccttaccatttgccca |
24165531 |
T |
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| Q |
105 |
gatatggcaccagtggcagcatgaagcctgaaactagtcaacgagtcatggatgatagaaaccttgaggttattgaacaattccatactcaattc--tag |
202 |
Q |
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| T |
24165530 |
gatatggcaccagtggcagcatgaagcctgaaactagtcaacgagtcatggatgatagaaatcttgaggttattgaataattccgtactcaattctatag |
24165431 |
T |
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| Q |
203 |
gaatctgtataagagttcatttggaaaccatgccatatcgaatcataatttgtacattctctcaataacttcatctgaaactatattttcaggctagaag |
302 |
Q |
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| T |
24165430 |
gaatctgtataagagttcatttggaaaccatgccatatcgaatcataatttgtacattctctcaataacttcatctgaaactatattttcaggctagaag |
24165331 |
T |
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| Q |
303 |
ttgctcgtcgggtaagcaaaggaggtcaaggtttccc |
339 |
Q |
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| T |
24165330 |
ttgctcgtcgggtaagcaaaggaggtcaaggtttccc |
24165294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 42233525 - 42233415
Alignment:
| Q |
71 |
aaacgaagagctgtttcaccttaccatttgcccagatatggcaccagtggcagcatgaagcctgaaactagtcaacgagtcatggatgatagaaaccttg |
170 |
Q |
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|||| ||||||||||||||||| || | |||||| |||| | ||||||||||||||||||||||||| ||||||| || |||||||||||||| | || |
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| T |
42233525 |
aaaccaagagctgtttcacctttccgtatgcccaaatatagtaccagtggcagcatgaagcctgaaaatagtcaaagatccatggatgatagaagctctg |
42233426 |
T |
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| Q |
171 |
aggttattgaa |
181 |
Q |
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| T |
42233425 |
aggttattgaa |
42233415 |
T |
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