View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9758_low_16 (Length: 321)
Name: NF9758_low_16
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 30737616 - 30737919
Alignment:
| Q |
1 |
gaagatccttcactcagatatcagattcctccacttcagcatagagaaagactctatttaagtgtgtcaaatttgcatcaagaaataccttcttgataaa |
100 |
Q |
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|||||||||||||||| |||||||| || ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30737616 |
gaagatccttcactcatatatcagactcgtccacttcagcatagagaaagcctctatttaagtgtgtcaaatttacatcaagaaataccttcttgataaa |
30737715 |
T |
|
| Q |
101 |
tgcacaaacttgttgagattactacgtactcaatacaaaggaaaaatttccttttcaaaataaaaaaccctacaaaatttgtaggtactactccttccaa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30737716 |
tgcagaaacttgttgagattactacgtactcaatacaaaggaaaaatttcctcttcaaaataaaaaaccctacaaaatttgtaggtactactccttccaa |
30737815 |
T |
|
| Q |
201 |
tatggaaactctggttacatttcgagcctgatcctctcttgttataataacctggataaaatgatctttgaaaatccacttcttcaattaacttcaatcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30737816 |
tatggaaactctggttacatttcgagcctgatcctctcttgttataataacctggataaaatgatctttgaaaatccacttcttcaattaacttcaatcc |
30737915 |
T |
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| Q |
301 |
caca |
304 |
Q |
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|||| |
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| T |
30737916 |
caca |
30737919 |
T |
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