View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9758_low_17 (Length: 319)

Name: NF9758_low_17
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9758_low_17
NF9758_low_17
[»] chr4 (1 HSPs)
chr4 (1-319)||(49208915-49209233)


Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 49209233 - 49208915
Alignment:
Q  1 atgccaaaaagcattccaactcattcatttcatcatatcacatcgatcacacttgaattcaatcttcatcactctctctcaaatcaacggtcataactgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49209233 atgccaaaaagcattccaactcattcatttcatcatatcacatcgatcacacttgaattcaatcttcatcactctctctcaaatcaacggtcataactgt 49209134  T
Q  101 tttatgtgttatttcattcatccctgtactatactatatatattgttgcattaactaactcactctaaacctttttctttagtttttacacacacaaaca 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49209133 tttatgtgttatttcattcatccctatactatactatatatattgttgcattaactaactcactctaaacctttttctttagtttttacacacacaaaca 49209034  T
Q  201 actcttataaaccattttacctcttcatcactcaactaagtgaaatcaaagaatatattagtagtaaccaaacaaagagaagtaaaagcttaattagttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49209033 actcttataaaccattttacctcttcatcactcaactaagtgaaatcaaaggatatattagtagtaaccaaacaaagagaagtaaaagcttaattagttt 49208934  T
Q  301 ggattatattggaatatat 319  Q
    |||||||||||||||||||    
T  49208933 ggattatattggaatatat 49208915  T

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