View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9758_low_18 (Length: 309)

Name: NF9758_low_18
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9758_low_18
NF9758_low_18
[»] chr3 (15 HSPs)
chr3 (127-277)||(4834109-4834263)
chr3 (127-277)||(4855081-4855229)
chr3 (127-277)||(4876816-4876964)
chr3 (127-247)||(4873121-4873239)
chr3 (74-103)||(19271616-19271645)
chr3 (74-103)||(34519874-34519903)
chr3 (74-103)||(48628143-48628172)
chr3 (75-103)||(5047426-5047454)
chr3 (71-103)||(5154715-5154747)
chr3 (75-103)||(6019657-6019685)
chr3 (75-103)||(9268571-9268599)
chr3 (75-103)||(38640395-38640423)
chr3 (75-103)||(42345441-42345469)
chr3 (71-103)||(43674175-43674207)
chr3 (75-103)||(54014555-54014583)
[»] chr7 (13 HSPs)
chr7 (65-103)||(25728450-25728488)
chr7 (68-103)||(31079101-31079136)
chr7 (73-103)||(11666752-11666782)
chr7 (73-103)||(43989040-43989070)
chr7 (74-103)||(4651633-4651662)
chr7 (74-103)||(9556835-9556864)
chr7 (74-103)||(11685295-11685324)
chr7 (74-103)||(16274466-16274495)
chr7 (74-103)||(41745086-41745115)
chr7 (75-103)||(4698935-4698963)
chr7 (75-103)||(17358263-17358291)
chr7 (75-103)||(28311105-28311133)
chr7 (75-103)||(30165472-30165500)
[»] chr2 (15 HSPs)
chr2 (66-100)||(7511336-7511370)
chr2 (71-103)||(39163817-39163849)
chr2 (73-103)||(5529183-5529213)
chr2 (73-103)||(27926929-27926959)
chr2 (74-103)||(5513742-5513771)
chr2 (74-103)||(8224386-8224415)
chr2 (74-103)||(8224647-8224676)
chr2 (74-103)||(20962303-20962332)
chr2 (71-100)||(40452185-40452214)
chr2 (75-103)||(2077042-2077070)
chr2 (75-103)||(2077302-2077330)
chr2 (75-103)||(10246953-10246981)
chr2 (75-103)||(36202118-36202146)
chr2 (75-103)||(42631776-42631804)
chr2 (75-103)||(43440471-43440499)
[»] chr8 (19 HSPs)
chr8 (67-103)||(13199323-13199359)
chr8 (64-99)||(12610678-12610713)
chr8 (73-103)||(23352259-23352289)
chr8 (73-103)||(27418171-27418201)
chr8 (74-131)||(28907683-28907743)
chr8 (73-103)||(28908739-28908769)
chr8 (65-103)||(33330847-33330885)
chr8 (74-103)||(1552733-1552762)
chr8 (62-103)||(2671974-2672015)
chr8 (75-131)||(4099642-4099701)
chr8 (74-103)||(7504505-7504534)
chr8 (74-103)||(10761187-10761216)
chr8 (74-103)||(19391631-19391660)
chr8 (75-103)||(116615-116643)
chr8 (75-103)||(3260870-3260898)
chr8 (76-131)||(7505496-7505554)
chr8 (75-103)||(12317529-12317557)
chr8 (76-131)||(28889026-28889084)
chr8 (75-103)||(43723660-43723688)
[»] chr4 (8 HSPs)
chr4 (67-103)||(19675868-19675904)
chr4 (65-103)||(54442242-54442280)
chr4 (74-103)||(39701996-39702025)
chr4 (75-103)||(6457406-6457434)
chr4 (75-103)||(6458182-6458210)
chr4 (76-131)||(23943886-23943944)
chr4 (75-103)||(23944967-23944995)
chr4 (75-103)||(54554142-54554170)
[»] scaffold0098 (1 HSPs)
scaffold0098 (65-103)||(4219-4257)
[»] scaffold0038 (1 HSPs)
scaffold0038 (73-103)||(29096-29126)
[»] chr6 (12 HSPs)
chr6 (73-103)||(28228598-28228628)
chr6 (74-103)||(2965831-2965860)
chr6 (74-103)||(9218480-9218509)
chr6 (74-103)||(16840294-16840323)
chr6 (66-103)||(19591559-19591596)
chr6 (72-100)||(9865291-9865319)
chr6 (75-103)||(11536732-11536760)
chr6 (75-103)||(11562242-11562270)
chr6 (75-103)||(14597352-14597380)
chr6 (75-103)||(22795243-22795271)
chr6 (75-103)||(26242539-26242567)
chr6 (75-103)||(27660372-27660400)
[»] chr5 (14 HSPs)
chr5 (74-131)||(39987132-39987192)
chr5 (74-103)||(13006679-13006708)
chr5 (74-103)||(13078698-13078727)
chr5 (75-104)||(16868018-16868047)
chr5 (75-131)||(22563234-22563293)
chr5 (74-103)||(22833660-22833689)
chr5 (74-103)||(27829952-27829981)
chr5 (74-103)||(29690724-29690753)
chr5 (74-103)||(29989461-29989490)
chr5 (75-103)||(11762246-11762274)
chr5 (75-103)||(20884031-20884059)
chr5 (75-103)||(38031954-38031982)
chr5 (75-103)||(41825042-41825070)
chr5 (76-131)||(41826256-41826314)
[»] chr1 (9 HSPs)
chr1 (74-131)||(13769870-13769930)
chr1 (74-103)||(3787236-3787265)
chr1 (74-103)||(11586488-11586517)
chr1 (66-103)||(15541688-15541725)
chr1 (74-103)||(16290617-16290646)
chr1 (75-103)||(163364-163392)
chr1 (75-103)||(1613852-1613880)
chr1 (75-103)||(7702101-7702129)
chr1 (75-103)||(45323446-45323474)
[»] scaffold0235 (1 HSPs)
scaffold0235 (75-103)||(24189-24217)
[»] scaffold0090 (1 HSPs)
scaffold0090 (75-103)||(15364-15392)
[»] scaffold0037 (1 HSPs)
scaffold0037 (75-103)||(96703-96731)
[»] scaffold0023 (1 HSPs)
scaffold0023 (71-103)||(125574-125606)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 127 - 277
Target Start/End: Complemental strand, 4834263 - 4834109
Alignment:
Q  127 ttatatttttccatcatcattttccagcatttcccctttcatctccctatcttcaataaacaacacccacttataatatttatatataactgtaacttca 226  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4834263 ttatatttttccatcatcattttccagcatttcccctttgatctccctatcttcaataaacaacacccacttacaatatttatatataactgtaacttca 4834164  T
Q  227 tgaacaacataacacta----ctaccaatcttcattagacatccctcactattaa 277  Q
    |||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  4834163 tgaacaacataacactactagctaccaatcttcattagacatccctcactattaa 4834109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 127 - 277
Target Start/End: Complemental strand, 4855229 - 4855081
Alignment:
Q  127 ttatatttttccatcatcattttccagcatttcccctttcatctccctatcttcaataaacaacacccacttataatatttatatataactgtaacttca 226  Q
    ||||||||||||||||||||||| |||||||||| |||  ||||||||||||||||||||||  |||||||| ||| | |||| ||||||| || || ||    
T  4855229 ttatatttttccatcatcatttttcagcatttccgcttcgatctccctatcttcaataaacattacccactt-taa-aattatttataactatagctcca 4855132  T
Q  227 tgaacaacataacactactaccaatcttcattagacatccctcactattaa 277  Q
    |||| ||| |||||||||||| ||||||||||| ||||||| |||||||||    
T  4855131 tgaataacgtaacactactactaatcttcattaaacatcccccactattaa 4855081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 127 - 277
Target Start/End: Complemental strand, 4876964 - 4876816
Alignment:
Q  127 ttatatttttccatcatcattttccagcatttcccctttcatctccctatcttcaataaacaacacccacttataatatttatatataactgtaacttca 226  Q
    ||||||||||||||||||||||| |||||||||| |||  ||||||||||||||||||||||  |||||||| ||| | |||| ||||||| || || ||    
T  4876964 ttatatttttccatcatcatttttcagcatttccgcttcgatctccctatcttcaataaacattacccactt-taa-aattatttataactatagctcca 4876867  T
Q  227 tgaacaacataacactactaccaatcttcattagacatccctcactattaa 277  Q
    |||| ||| |||||||||||| ||||||||||| | ||||| |||||||||    
T  4876866 tgaataacgtaacactactactaatcttcattaaatatcccccactattaa 4876816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 127 - 247
Target Start/End: Complemental strand, 4873239 - 4873121
Alignment:
Q  127 ttatatttttccatcatcattttccagcatttcccctttcatctccctatcttcaataaacaacacccacttataatatttatatataactgtaacttca 226  Q
    |||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||  |||||||| ||| | |||| ||||||| || || ||    
T  4873239 ttatatttttccatcatcattttccagcatttccgcttcgatctccctatcttcaataaacataacccactt-taa-aattatttataactatagctcca 4873142  T
Q  227 tgaacaacataacactactac 247  Q
    ||| |||| ||||||||||||    
T  4873141 tgatcaacgtaacactactac 4873121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 19271616 - 19271645
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  19271616 ttagggttaatagtgtttttcacccctgta 19271645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 34519874 - 34519903
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  34519874 ttagggttaatagtgtttttcacccctgta 34519903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 48628143 - 48628172
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  48628143 ttagggttaatagtgtttttcacccctgta 48628172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 5047454 - 5047426
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  5047454 tagggttaatagtgtttttcacccctgta 5047426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 5154715 - 5154747
Alignment:
Q  71 ttattagggttaatagtgtttttcacccctgta 103  Q
    ||||| |||||||||||||||||||||||||||    
T  5154715 ttatttgggttaatagtgtttttcacccctgta 5154747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 6019685 - 6019657
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  6019685 tagggttaatagtgtttttcacccctgta 6019657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 9268571 - 9268599
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  9268571 tagggttaatagtgtttttcacccctgta 9268599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 38640395 - 38640423
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  38640395 tagggttaatagtgtttttcacccctgta 38640423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 42345469 - 42345441
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  42345469 tagggttaatagtgtttttcacccctgta 42345441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 43674175 - 43674207
Alignment:
Q  71 ttattagggttaatagtgtttttcacccctgta 103  Q
    ||||| |||||||||||||||||||||||||||    
T  43674175 ttatttgggttaatagtgtttttcacccctgta 43674207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 54014555 - 54014583
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  54014555 tagggttaatagtgtttttcacccctgta 54014583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 25728488 - 25728450
Alignment:
Q  65 ttattattattagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  25728488 ttattattattaaggttaatagtgtttttcacccctgta 25728450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 31079101 - 31079136
Alignment:
Q  68 ttattattagggttaatagtgtttttcacccctgta 103  Q
    ||||| ||||||||||||||||||||||||||||||    
T  31079101 ttatttttagggttaatagtgtttttcacccctgta 31079136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 11666752 - 11666782
Alignment:
Q  73 attagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||||    
T  11666752 attagggttaatagtgtttttcacccctgta 11666782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 43989040 - 43989070
Alignment:
Q  73 attagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||||    
T  43989040 attagggttaatagtgtttttcacccctgta 43989070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 4651662 - 4651633
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  4651662 ttagggttaatagtgtttttcacccctgta 4651633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 9556864 - 9556835
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  9556864 ttagggttaatagtgtttttcacccctgta 9556835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 11685324 - 11685295
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  11685324 ttagggttaatagtgtttttcacccctgta 11685295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 16274466 - 16274495
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  16274466 ttagggttaatagtgtttttcacccctgta 16274495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 41745086 - 41745115
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  41745086 ttagggttaatagtgtttttcacccctgta 41745115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 4698935 - 4698963
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  4698935 tagggttaatagtgtttttcacccctgta 4698963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 17358291 - 17358263
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  17358291 tagggttaatagtgtttttcacccctgta 17358263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 28311105 - 28311133
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  28311105 tagggttaatagtgtttttcacccctgta 28311133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 30165472 - 30165500
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  30165472 tagggttaatagtgtttttcacccctgta 30165500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 7511336 - 7511370
Alignment:
Q  66 tattattattagggttaatagtgtttttcacccct 100  Q
    |||||||||||||||||||||||||||||||||||    
T  7511336 tattattattagggttaatagtgtttttcacccct 7511370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 39163817 - 39163849
Alignment:
Q  71 ttattagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||||||    
T  39163817 ttattagggttaatagtgtttttcacccctgta 39163849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 103
Target Start/End: Complemental strand, 5529213 - 5529183
Alignment:
Q  73 attagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||||    
T  5529213 attagggttaatagtgtttttcacccctgta 5529183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 27926929 - 27926959
Alignment:
Q  73 attagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||||    
T  27926929 attagggttaatagtgtttttcacccctgta 27926959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 5513771 - 5513742
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  5513771 ttagggttaatagtgtttttcacccctgta 5513742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 8224386 - 8224415
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  8224386 ttagggttaatagtgtttttcacccctgta 8224415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 8224676 - 8224647
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  8224676 ttagggttaatagtgtttttcacccctgta 8224647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 20962332 - 20962303
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  20962332 ttagggttaatagtgtttttcacccctgta 20962303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 100
Target Start/End: Complemental strand, 40452214 - 40452185
Alignment:
Q  71 ttattagggttaatagtgtttttcacccct 100  Q
    ||||||||||||||||||||||||||||||    
T  40452214 ttattagggttaatagtgtttttcacccct 40452185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 2077042 - 2077070
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  2077042 tagggttaatagtgtttttcacccctgta 2077070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 2077330 - 2077302
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  2077330 tagggttaatagtgtttttcacccctgta 2077302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 10246981 - 10246953
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  10246981 tagggttaatagtgtttttcacccctgta 10246953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 36202118 - 36202146
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  36202118 tagggttaatagtgtttttcacccctgta 36202146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 42631776 - 42631804
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  42631776 tagggttaatagtgtttttcacccctgta 42631804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 43440471 - 43440499
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  43440471 tagggttaatagtgtttttcacccctgta 43440499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 13199359 - 13199323
Alignment:
Q  67 attattattagggttaatagtgtttttcacccctgta 103  Q
    ||||| |||||||||||||||||||||||||||||||    
T  13199359 attataattagggttaatagtgtttttcacccctgta 13199323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 12610678 - 12610713
Alignment:
Q  64 tttattattattagggttaatagtgtttttcacccc 99  Q
    ||||||||| ||||||||||||||||||||||||||    
T  12610678 tttattatttttagggttaatagtgtttttcacccc 12610713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 103
Target Start/End: Complemental strand, 23352289 - 23352259
Alignment:
Q  73 attagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||||    
T  23352289 attagggttaatagtgtttttcacccctgta 23352259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 103
Target Start/End: Complemental strand, 27418201 - 27418171
Alignment:
Q  73 attagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||||    
T  27418201 attagggttaatagtgtttttcacccctgta 27418171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 28907683 - 28907743
Alignment:
Q  74 ttagggttaatagtgtttttcacccctg---tataatccatttccgattttcacccttata 131  Q
    ||||||||||||||||||||||||||||   ||||  ||||||||| ||||| ||||||||    
T  28907683 ttagggttaatagtgtttttcacccctgtaatataggccatttccggttttcgcccttata 28907743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 103
Target Start/End: Complemental strand, 28908769 - 28908739
Alignment:
Q  73 attagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||||    
T  28908769 attagggttaatagtgtttttcacccctgta 28908739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 33330847 - 33330885
Alignment:
Q  65 ttattattattagggttaatagtgtttttcacccctgta 103  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  33330847 ttattgttatttgggttaatagtgtttttcacccctgta 33330885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 1552733 - 1552762
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  1552733 ttagggttaatagtgtttttcacccctgta 1552762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 2671974 - 2672015
Alignment:
Q  62 gctttattattattagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||| | ||||||||||||| ||||||||||||||    
T  2671974 gctttattattttaagggttaatagtgcttttcacccctgta 2672015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 4099642 - 4099701
Alignment:
Q  75 tagggttaatagtgtttttcacccctgtataat---ccatttccgattttcacccttata 131  Q
    |||||||||||||||||||||||||||||  ||   | ||||||||||||| ||||||||    
T  4099642 tagggttaatagtgtttttcacccctgtaatataggctatttccgattttcgcccttata 4099701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 7504505 - 7504534
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  7504505 ttagggttaatagtgtttttcacccctgta 7504534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 10761216 - 10761187
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  10761216 ttagggttaatagtgtttttcacccctgta 10761187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 19391631 - 19391660
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  19391631 ttagggttaatagtgtttttcacccctgta 19391660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 116615 - 116643
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  116615 tagggttaatagtgtttttcacccctgta 116643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 3260870 - 3260898
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  3260870 tagggttaatagtgtttttcacccctgta 3260898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 7505554 - 7505496
Alignment:
Q  76 agggttaatagtgtttttcacccctg---tataatccatttccgattttcacccttata 131  Q
    ||||||||||||||||||||||||||   ||||  ||||||||| ||||| ||||||||    
T  7505554 agggttaatagtgtttttcacccctgtaatataggccatttccggttttcgcccttata 7505496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 12317529 - 12317557
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  12317529 tagggttaatagtgtttttcacccctgta 12317557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 28889026 - 28889084
Alignment:
Q  76 agggttaatagtgtttttcacccctg---tataatccatttccgattttcacccttata 131  Q
    ||||||||||||||||||||||||||   ||||  ||||||||| ||||| ||||||||    
T  28889026 agggttaatagtgtttttcacccctgtaatataggccatttccggttttcgcccttata 28889084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 43723688 - 43723660
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  43723688 tagggttaatagtgtttttcacccctgta 43723660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 19675904 - 19675868
Alignment:
Q  67 attattattagggttaatagtgtttttcacccctgta 103  Q
    ||||||| |||||||||||||||||||||||||||||    
T  19675904 attattaatagggttaatagtgtttttcacccctgta 19675868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 54442280 - 54442242
Alignment:
Q  65 ttattattattagggttaatagtgtttttcacccctgta 103  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  54442280 ttattataaatagggttaatagtgtttttcacccctgta 54442242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 39701996 - 39702025
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  39701996 ttagggttaatagtgtttttcacccctgta 39702025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 6457406 - 6457434
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  6457406 tagggttaatagtgtttttcacccctgta 6457434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 6458210 - 6458182
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  6458210 tagggttaatagtgtttttcacccctgta 6458182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 23943886 - 23943944
Alignment:
Q  76 agggttaatagtgtttttcacccctg---tataatccatttccgattttcacccttata 131  Q
    ||||||||||||||||||||||||||   ||||  ||||||||| ||||| ||||||||    
T  23943886 agggttaatagtgtttttcacccctgtaatataggccatttccggttttcgcccttata 23943944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 23944995 - 23944967
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  23944995 tagggttaatagtgtttttcacccctgta 23944967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 54554170 - 54554142
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  54554170 tagggttaatagtgtttttcacccctgta 54554142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 4257 - 4219
Alignment:
Q  65 ttattattattagggttaatagtgtttttcacccctgta 103  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  4257 ttattctttttagggttaatagtgtttttcacccctgta 4219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 29096 - 29126
Alignment:
Q  73 attagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||||    
T  29096 attagggttaatagtgtttttcacccctgta 29126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 28228598 - 28228628
Alignment:
Q  73 attagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||||    
T  28228598 attagggttaatagtgtttttcacccctgta 28228628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 2965860 - 2965831
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  2965860 ttagggttaatagtgtttttcacccctgta 2965831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 9218509 - 9218480
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  9218509 ttagggttaatagtgtttttcacccctgta 9218480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 16840294 - 16840323
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  16840294 ttagggttaatagtgtttttcacccctgta 16840323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 19591596 - 19591559
Alignment:
Q  66 tattattattagggttaatagtgtttttcacccctgta 103  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  19591596 tattattaaaagggttaatagtgtttttcacccctgta 19591559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 100
Target Start/End: Complemental strand, 9865319 - 9865291
Alignment:
Q  72 tattagggttaatagtgtttttcacccct 100  Q
    |||||||||||||||||||||||||||||    
T  9865319 tattagggttaatagtgtttttcacccct 9865291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 11536732 - 11536760
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  11536732 tagggttaatagtgtttttcacccctgta 11536760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 11562242 - 11562270
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  11562242 tagggttaatagtgtttttcacccctgta 11562270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 14597380 - 14597352
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  14597380 tagggttaatagtgtttttcacccctgta 14597352  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 22795271 - 22795243
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  22795271 tagggttaatagtgtttttcacccctgta 22795243  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 26242567 - 26242539
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  26242567 tagggttaatagtgtttttcacccctgta 26242539  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 27660372 - 27660400
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  27660372 tagggttaatagtgtttttcacccctgta 27660400  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 39987132 - 39987192
Alignment:
Q  74 ttagggttaatagtgtttttcacccctg---tataatccatttccgattttcacccttata 131  Q
    ||||||||||||||||||||||||||||   ||||   |||||||||||||| ||||||||    
T  39987132 ttagggttaatagtgtttttcacccctgtaatataggtcatttccgattttcgcccttata 39987192  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 13006708 - 13006679
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  13006708 ttagggttaatagtgtttttcacccctgta 13006679  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 13078727 - 13078698
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  13078727 ttagggttaatagtgtttttcacccctgta 13078698  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 104
Target Start/End: Complemental strand, 16868047 - 16868018
Alignment:
Q  75 tagggttaatagtgtttttcacccctgtat 104  Q
    ||||||||||||||||||||||||||||||    
T  16868047 tagggttaatagtgtttttcacccctgtat 16868018  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 22563293 - 22563234
Alignment:
Q  75 tagggttaatagtgtttttcacccctg---tataatccatttccgattttcacccttata 131  Q
    |||||||||||||||||||||||||||   ||||  ||||||||| ||||| ||||||||    
T  22563293 tagggttaatagtgtttttcacccctgtaatataggccatttccggttttcgcccttata 22563234  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 22833689 - 22833660
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  22833689 ttagggttaatagtgtttttcacccctgta 22833660  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 27829952 - 27829981
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  27829952 ttagggttaatagtgtttttcacccctgta 27829981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 29690753 - 29690724
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  29690753 ttagggttaatagtgtttttcacccctgta 29690724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 29989461 - 29989490
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  29989461 ttagggttaatagtgtttttcacccctgta 29989490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 11762246 - 11762274
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  11762246 tagggttaatagtgtttttcacccctgta 11762274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 20884031 - 20884059
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  20884031 tagggttaatagtgtttttcacccctgta 20884059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 38031954 - 38031982
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  38031954 tagggttaatagtgtttttcacccctgta 38031982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 41825042 - 41825070
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  41825042 tagggttaatagtgtttttcacccctgta 41825070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 41826314 - 41826256
Alignment:
Q  76 agggttaatagtgtttttcacccctg---tataatccatttccgattttcacccttata 131  Q
    ||||||||||||||||||||||||||   ||||  ||||||||| ||||| ||||||||    
T  41826314 agggttaatagtgtttttcacccctgtaatataggccatttccggttttcgcccttata 41826256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 13769930 - 13769870
Alignment:
Q  74 ttagggttaatagtgtttttcacccctg---tataatccatttccgattttcacccttata 131  Q
    ||||||||||||||||||||||||||||   ||||  ||||||||| ||||| ||||||||    
T  13769930 ttagggttaatagtgtttttcacccctgtaatataggccatttccggttttcgcccttata 13769870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 3787236 - 3787265
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  3787236 ttagggttaatagtgtttttcacccctgta 3787265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 11586517 - 11586488
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  11586517 ttagggttaatagtgtttttcacccctgta 11586488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 15541725 - 15541688
Alignment:
Q  66 tattattattagggttaatagtgtttttcacccctgta 103  Q
    |||||| || ||||||||||||||||||||||||||||    
T  15541725 tattataataagggttaatagtgtttttcacccctgta 15541688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 16290617 - 16290646
Alignment:
Q  74 ttagggttaatagtgtttttcacccctgta 103  Q
    ||||||||||||||||||||||||||||||    
T  16290617 ttagggttaatagtgtttttcacccctgta 16290646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 163392 - 163364
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  163392 tagggttaatagtgtttttcacccctgta 163364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 1613880 - 1613852
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  1613880 tagggttaatagtgtttttcacccctgta 1613852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 7702101 - 7702129
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  7702101 tagggttaatagtgtttttcacccctgta 7702129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 45323474 - 45323446
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  45323474 tagggttaatagtgtttttcacccctgta 45323446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 24189 - 24217
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  24189 tagggttaatagtgtttttcacccctgta 24217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 15364 - 15392
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  15364 tagggttaatagtgtttttcacccctgta 15392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 96731 - 96703
Alignment:
Q  75 tagggttaatagtgtttttcacccctgta 103  Q
    |||||||||||||||||||||||||||||    
T  96731 tagggttaatagtgtttttcacccctgta 96703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 125606 - 125574
Alignment:
Q  71 ttattagggttaatagtgtttttcacccctgta 103  Q
    ||||| |||||||||||||||||||||||||||    
T  125606 ttatttgggttaatagtgtttttcacccctgta 125574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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