View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9758_low_2 (Length: 475)

Name: NF9758_low_2
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9758_low_2
NF9758_low_2
[»] chr7 (15 HSPs)
chr7 (19-462)||(24122015-24122458)
chr7 (28-266)||(24132455-24132693)
chr7 (36-266)||(24232527-24232757)
chr7 (24-257)||(24151109-24151342)
chr7 (29-254)||(24138389-24138614)
chr7 (30-234)||(24238059-24238263)
chr7 (26-234)||(24154266-24154474)
chr7 (27-235)||(24284008-24284217)
chr7 (24-264)||(3494819-3495059)
chr7 (131-248)||(21194261-21194378)
chr7 (24-209)||(24146118-24146303)
chr7 (19-226)||(24161172-24161379)
chr7 (77-198)||(21199524-21199645)
chr7 (117-225)||(23342851-23342959)
chr7 (120-194)||(23348065-23348139)
[»] chr2 (2 HSPs)
chr2 (19-198)||(28160509-28160688)
chr2 (41-264)||(10988778-10989001)
[»] chr1 (2 HSPs)
chr1 (43-260)||(15380143-15380360)
chr1 (24-264)||(3151024-3151263)
[»] chr6 (1 HSPs)
chr6 (391-447)||(1861430-1861486)
[»] chr3 (1 HSPs)
chr3 (117-157)||(1157403-1157443)
[»] chr8 (2 HSPs)
chr8 (399-442)||(29484932-29484975)
chr8 (394-442)||(24284213-24284261)
[»] chr5 (1 HSPs)
chr5 (388-442)||(2233170-2233224)


Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 24122015 - 24122458
Alignment:
Q  19 tattggaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24122015 tattggaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccac 24122114  T
Q  119 aagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24122115 aagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttg 24122214  T
Q  219 tccaccatgactctcaaggtaacttcgtcaccttgttcaactgattcacttaaatttccagcagccataggatagaaatcacagattaacctgagataag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24122215 tccaccatgactctcaaggtaacttcgtcaccttgttcaactgattcacttaaatttccagcagccataggatagaaatcacagattaacctgagataag 24122314  T
Q  319 caaattaggaatacatcattattaacttgtaaaatggatgctttctttgggtgtagtttttacacaatttcattttttggtcaaatagtctggtggttag 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24122315 caaattaggaatacatcattattaacttgtaaaatggatgctttctttgggtgtagtttttacacaatttcattttttggtcaaatagtctggtggttag 24122414  T
Q  419 aaattcacctcttaaaatgaataactgagataaatgagatgtct 462  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  24122415 aaattcacctcttaaaatgaataactgagataagtgagatgtct 24122458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 28 - 266
Target Start/End: Original strand, 24132455 - 24132693
Alignment:
Q  28 atagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttga 127  Q
    ||||||| |||| |||||||||||  ||||||||||| |||| | | | |||||||||| ||||||||||||||||||||||||| |||||||||||||     
T  24132455 atagatattgttgatcaagatctgtcacactttgatacagtgaattaatgctgccaaatatcactgcttcaatatctgactcctttgccacaagtcttgc 24132554  T
Q  128 aatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatg 227  Q
    |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||| |||||||||||      
T  24132555 aatagtacctaaaggcaatgttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgctcttttgtttgtccaccaaa 24132654  T
Q  228 actctcaaggtaacttcgtcaccttgttcaactgattca 266  Q
    |||||||||||||||| |||||||||||||| |||||||    
T  24132655 actctcaaggtaactttgtcaccttgttcaaatgattca 24132693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 36 - 266
Target Start/End: Original strand, 24232527 - 24232757
Alignment:
Q  36 tgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaaatagtac 135  Q
    |||| |||||||| ||| ||||||||||| | ||  || | |||||||||| ||||||||||||||| ||| ||||||||||||| ||||| |||||| |    
T  24232527 tgttgatcaagatttgacacactttgatacaatgagctaatgctgccaaatttcactgcttcaatatttgagtccttagccacaaatcttgcaatagtcc 24232626  T
Q  136 ctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatgactctcaa 235  Q
    |||| || || |||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||  |||||||||||||||  | |||||     
T  24232627 ctaaaggcaatgttaagaagctgaagagagcatcaacgaaatccttcccagcctcagcatacacaactttgttcttttctttgtccaccaaaattctcag 24232726  T
Q  236 ggtaacttcgtcaccttgttcaactgattca 266  Q
    |  ||| |  ||| |||||||||||||||||    
T  24232727 gcgaacattatcaacttgttcaactgattca 24232757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 24151109 - 24151342
Alignment:
Q  24 gaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtc 123  Q
    ||||||||||| |||  ||||||||||   ||||||||||| |||| |||||  || |||||| |||||||||| |||| |||||| | |||||| ||||    
T  24151109 gaccatagatattgtggatcaagatctttcacactttgatatagtgaactcaaactaccaaatttcactgcttcgatatttgactcttcagccacgagtc 24151208  T
Q  124 ttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccac 223  Q
    | | |||||||||||| || || |||||||||||||| || |||||||||||||||||||| || |||||  | | |||||||||| | ||||| || ||    
T  24151209 tagcaatagtacctaaaggaaatgttaagaagctgaagagtgcatcaacaaaatccttcccagcctcagccaatagaactttgtttttctctttatcgac 24151308  T
Q  224 catgactctcaaggtaacttcgtcaccttgttca 257  Q
    ||  |||||||||||||||| |||| ||||||||    
T  24151309 caaaactctcaaggtaactttgtcaacttgttca 24151342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 29 - 254
Target Start/End: Original strand, 24138389 - 24138614
Alignment:
Q  29 tagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaa 128  Q
    |||||| |||| ||||||| |||| ||||||||||| |||| ||| | |||||||||||||||||||||||||| |||||| ||| |||| | || ||      
T  24138389 tagatattgttgatcaagaactgacacactttgatagagtgaacttatgctgccaaatctcactgcttcaatatttgactctttatccacgattcctgcg 24138488  T
Q  129 atagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatga 228  Q
    ||||||||||| ||||| |||||||| || |||||| ||||||||||||||||  |||| |||| | ||| |||||||||| | || ||||||||||  |    
T  24138489 atagtacctaagggtaatgttaagaaactcaaaagaacatcaacaaaatccttatctgcctcagtaaacagaactttgtttttctccttgtccaccaaaa 24138588  T
Q  229 ctctcaaggtaacttcgtcaccttgt 254  Q
    |||| | ||| |||| |||| |||||    
T  24138589 ctcttagggttactttgtcaacttgt 24138614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 234
Target Start/End: Complemental strand, 24238263 - 24238059
Alignment:
Q  30 agatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaaa 129  Q
    ||||| |||||||||||||||| |||||||||||  |||| ||||||||| |||| | | || ||| | ||||  |||| ||||||| ||||||||| ||    
T  24238263 agatattgttcatcaagatctgctacactttgatgcagtgaactcaggcttccaactgttacagctccgatattcgactgcttagccgcaagtcttgcaa 24238164  T
Q  130 tagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatgac 229  Q
    |||| ||||| || || |||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||  ||| |  ||||||||| ||    
T  24238163 tagttcctaaaggcaatgttaagaaactgaagagagcatcgacaaaatccttgcctgcctcagcatacacaactttgttcctttttccgtccaccataac 24238064  T
Q  230 tctca 234  Q
    |||||    
T  24238063 tctca 24238059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 24154266 - 24154474
Alignment:
Q  26 ccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtctt 125  Q
    ||||||||| | ||| | ||||||||| ||||||||||| |||| ||| | |||   |||| | |||||||||||||  ||||| ||||  |||||||||    
T  24154266 ccatagatattcttctttaagatctgaaacactttgatacagtgaactaatgctattaaatttaactgcttcaatattcgactctttagatacaagtctt 24154365  T
Q  126 gaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccacca 225  Q
    | |||||||||||| || || ||||||||||| || ||| ||||||| ||||||||| ||||||||||||| |||||||| ||  |  ||||||||||||    
T  24154366 gcaatagtacctaaaggcaatgttaagaagcttaacagaacatcaacgaaatccttctctgcttcagcataaacaacttttttcctcgctttgtccacca 24154465  T
Q  226 tgactctca 234  Q
      |||||||    
T  24154466 aaactctca 24154474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 235
Target Start/End: Complemental strand, 24284217 - 24284008
Alignment:
Q  27 catagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctca-ctgcttcaatatctgactccttagccacaagtctt 125  Q
    |||| ||| |||| ||||||||||  |||||||||||| ||||  || | |||||||||  | | |||||||||||| ||| ||  |||| || ||||||    
T  24284217 cataaatattgttgatcaagatcttttacactttgatacagtgagctaatgctgccaaaattgaactgcttcaatatttgagtctgtagcaacgagtctt 24284118  T
Q  126 gaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccacca 225  Q
    | |||||| ||||| || ||||| ||||||||||| ||  ||||||||||||||||| ||||||||| ||| | |||||||||  ||||||| |||||||    
T  24284117 gcaatagtccctaagggcaaggtaaagaagctgaagaggacatcaacaaaatccttcactgcttcaggatatagaactttgttactttctttatccacca 24284018  T
Q  226 tgactctcaa 235  Q
    | ||||||||    
T  24284017 taactctcaa 24284008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 24 - 264
Target Start/End: Original strand, 3494819 - 3495059
Alignment:
Q  24 gaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtc 123  Q
    ||||||||||| ||||  ||||  | ||| ||||||||||| ||||  || | ||| |||||| ||||||||||||||| ||| |||||||  || | ||    
T  3494819 gaccatagatattgttggtcaaattttgacacactttgatatagtgagctaatgctaccaaatttcactgcttcaatatttgaatccttagaaactaatc 3494918  T
Q  124 ttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccac 223  Q
    ||| |||||||||||  || || |||||||| || || ||| |||| || |||||||| || ||||||||||||| |||| | ||| |||||||||| ||    
T  3494919 ttgcaatagtacctagaggcaatgttaagaaactaaagagaacatcgacgaaatccttaccggcttcagcatacagaactctatttctttctttgtcaac 3495018  T
Q  224 catgactctcaaggtaacttcgtcaccttgttcaactgatt 264  Q
     |  |||| |||| |||||| |||| |||||||||||||||    
T  3495019 taaaactcgcaagctaactttgtcaacttgttcaactgatt 3495059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 21194378 - 21194261
Alignment:
Q  131 agtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatgact 230  Q
    ||||||||| || || |||||||||||||| ||| | |||| ||||||||||||||| |||||||||| |||||||||  |||||||||||||||| ||     
T  21194378 agtacctaaaggcaatgttaagaagctgaatagaacttcaataaaatccttccctgcctcagcatacaaaactttgttcctttctttgtccaccataacc 21194279  T
Q  231 ctcaaggtaacttcgtca 248  Q
    ||||| ||||||| ||||    
T  21194278 ctcaatgtaactttgtca 21194261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 209
Target Start/End: Original strand, 24146118 - 24146303
Alignment:
Q  24 gaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtc 123  Q
    ||||| ||||| |||  |||||||||||| ||||||||||| | ||  || | |||||||||| |||||| |||||||| ||| ||||| ||||| |||     
T  24146118 gaccaaagatattgtgtatcaagatctgacacactttgatacaatgagctaatgctgccaaatttcactgattcaatatttgagtcctttgccacgagtt 24146217  T
Q  124 ttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgttt 209  Q
    ||| ||| || ||||| || || | ||||||||| |||||| |||||||||||||||| ||||| || ||| ||| ||||||||||    
T  24146218 ttgcaatggtccctaaaggcaatgataagaagctcaaaagaacatcaacaaaatcctttcctgcctctgcaaacagaactttgttt 24146303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 24161172 - 24161379
Alignment:
Q  19 tattggaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccac 118  Q
    |||| ||||| ||||| ||| |||| |||||||| |||||| | || |||| ||| | ||||||||| ||||||||||| |||| |||||| ||||  |     
T  24161172 tatttgaccagagatactgtgcatcgagatctgacacacttaggtacagtgaactaatgctgccaaacctcactgcttccatatttgactctttagatat 24161271  T
Q  119 aagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttg 218  Q
     ||||  | |||||| ||||  ||||| || ||||||||||||||| |||| ||||||||||| || || |||||||| | |||||| ||  ||||||||    
T  24161272 gagtcaagcaatagtccctagaggtaatgtcaagaagctgaaaagaacatcgacaaaatcctttccagcctcagcatatagaactttcttcctttctttg 24161371  T
Q  219 tccaccat 226  Q
    ||||||||    
T  24161372 tccaccat 24161379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 198
Target Start/End: Complemental strand, 21199645 - 21199524
Alignment:
Q  77 gctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaa 176  Q
    |||||||||| |||  ||||||||||  |||||||  | ||| ||||||| |||||| ||||| || || |||||||||| ||| |||||||||||||||    
T  21199645 gctgccaaatttcatagcttcaatattcgactcctcggacactagtcttgcaatagttcctaaaggcaatgttaagaagccgaagagagcatcaacaaaa 21199546  T
Q  177 tccttccctgcttcagcataca 198  Q
    ||||| ||||| ||||||||||    
T  21199545 tcctttcctgcctcagcataca 21199524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 117 - 225
Target Start/End: Original strand, 23342851 - 23342959
Alignment:
Q  117 acaagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctt 216  Q
    |||||||||| |||||| ||||| || || ||||||||||| || ||| |||| ||||| ||||| |||||||||||| |||  ||||||||  ||||||    
T  23342851 acaagtcttgcaatagttcctaaaggcaatgttaagaagctaaacagaacatccacaaagtcctttcctgcttcagcaaacaagactttgttggtttctt 23342950  T
Q  217 tgtccacca 225  Q
    ||| |||||    
T  23342951 tgttcacca 23342959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 23348065 - 23348139
Alignment:
Q  120 agtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagca 194  Q
    ||||||| |||||| |||||||| || |||||||| || || ||| |||| ||||| || |||||||||||||||    
T  23348065 agtcttgcaatagttcctaatggcaatgttaagaaactaaatagaacatcgacaaagtctttccctgcttcagca 23348139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 28160688 - 28160509
Alignment:
Q  19 tattggaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccac 118  Q
    ||||||||||||||||| |||||||||||||||| || || ||||  ||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  28160688 tattggaccatagatagagttcatcaagatctgagacgctatgatgcagtgtactcaggctgccaaatttcactgcgtcaatatctgactccttagccac 28160589  T
Q  119 aagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcataca 198  Q
    |||||| ||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28160588 aagtctagaaatagtacctaacagtaaggttaagaagctgaaaagagcaccaacaaaatccttccctgcttcagcataca 28160509  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 41 - 264
Target Start/End: Complemental strand, 10989001 - 10988778
Alignment:
Q  41 atcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaaatagtacctaat 140  Q
    ||||||||||   ||||||||||| |||| ||| | ||| ||||||   ||||||||||||| ||||||  ||||||||||||| | |||||| |||||     
T  10989001 atcaagatctttcacactttgatatagtgaactaatgctaccaaattgaactgcttcaatatttgactctgtagccacaagtctcgcaatagtccctaaa 10988902  T
Q  141 ggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatgactctcaaggtaa 240  Q
    || || |||||||||||||| ||| ||||||| ||||||||| |||| |||||||||| |||||||||  ||||||| |||||| | |||||||| ||||    
T  10988901 ggcaatgttaagaagctgaagagaacatcaacgaaatccttcactgcctcagcatacagaactttgttactttctttatccaccttaactctcaacgtaa 10988802  T
Q  241 cttcgtcaccttgttcaactgatt 264  Q
     || |||| ||| |||||| ||||    
T  10988801 ttttgtcaacttcttcaacagatt 10988778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 43 - 260
Target Start/End: Complemental strand, 15380360 - 15380143
Alignment:
Q  43 caagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaaatagtacctaatgg 142  Q
    ||||||| ||||||||||  || | ||  |||| ||| |||||| ||||||| || |||| ||||||||||||| ||||||||| |||||| ||||| ||    
T  15380360 caagatccgatacactttcgtacaatgagctcaagcttccaaatttcactgcgtcgatatttgactccttagccgcaagtcttgcaatagtccctaaagg 15380261  T
Q  143 taaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatgactctcaaggtaact 242  Q
     ||  |||||||||||||||||| ||||||||||||||||||||| ||  |||| | |||||||||  ||||| | |||||||| | ||||||| |||||    
T  15380260 aaatattaagaagctgaaaagagtatcaacaaaatccttccctgcctctacatatagaactttgttcctttctctatccaccataaatctcaagctaact 15380161  T
Q  243 tcgtcaccttgttcaact 260  Q
    |||||| |||||||||||    
T  15380160 tcgtcaacttgttcaact 15380143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 264
Target Start/End: Complemental strand, 3151263 - 3151024
Alignment:
Q  24 gaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtc 123  Q
    ||||||||||| |||| ||||||||| ||||||| | |||| | ||  || | |||||||| | ||||||||||||||| |||||||| ||  |  ||||    
T  3151263 gaccatagatattgttgatcaagatccgatacacctcgatacaatgagcttatgctgccaagtttcactgcttcaatatttgactcctgagaaatgagtc 3151164  T
Q  124 ttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccac 223  Q
    ||| |||||| ||||  ||||| ||||| || || |||||| |||| || ||||||||||| || |||||||| | ||||| |||  |||||||||||||    
T  3151163 ttgcaatagtccctagaggtaatgttaaaaaactcaaaagaacatcgacgaaatccttcccagcctcagcatatagaactt-gttcctttctttgtccac 3151065  T
Q  224 catgactctcaaggtaacttcgtcaccttgttcaactgatt 264  Q
    ||| | ||||||| |||||| |||| |||||||||| ||||    
T  3151064 cataattctcaagctaactttgtcaacttgttcaacggatt 3151024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 447
Target Start/End: Complemental strand, 1861486 - 1861430
Alignment:
Q  391 ttttttggtcaaatagtctggtggttagaaattcacctcttaaaatgaataactgag 447  Q
    |||||| ||||| |||||| |||| || |||||||||||||||||||||||| ||||    
T  1861486 tttttttgtcaagtagtcttgtggctaaaaattcacctcttaaaatgaataagtgag 1861430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 1157403 - 1157443
Alignment:
Q  117 acaagtcttgaaatagtacctaatggtaaggttaagaagct 157  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  1157403 acaagtcttgcaatggtacctaatggtaaggttaagaagct 1157443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 442
Target Start/End: Complemental strand, 29484975 - 29484932
Alignment:
Q  399 tcaaatagtctggtggttagaaattcacctcttaaaatgaataa 442  Q
    ||||||||||| |||| |||| ||||||||||||||||||||||    
T  29484975 tcaaatagtctagtggctagatattcacctcttaaaatgaataa 29484932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 442
Target Start/End: Original strand, 24284213 - 24284261
Alignment:
Q  394 tttggtcaaatagtctggtggttagaaattcacctcttaaaatgaataa 442  Q
    |||| |||||||| || |||| |||| ||||||||||||||||||||||    
T  24284213 tttgttcaaatagcctagtggctagacattcacctcttaaaatgaataa 24284261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 442
Target Start/End: Complemental strand, 2233224 - 2233170
Alignment:
Q  388 tcattttttggtcaaatagtctggtggttagaaattcacctcttaaaatgaataa 442  Q
    |||||||||||||||||| | |  |||||| ||||||| ||||||||||||||||    
T  2233224 tcattttttggtcaaataatttattggttaaaaattcaactcttaaaatgaataa 2233170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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