View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9758_low_21 (Length: 293)
Name: NF9758_low_21
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 28451272 - 28451050
Alignment:
| Q |
12 |
agagatgaggttgttattgttggacttgttataagtaaatgatgtaatgaattggggtagacgagagaatgaagaattggggtaaaagagatgaggttgt |
111 |
Q |
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| T |
28451272 |
agagatgaggttgttattgttggacttgttataagtaaatgatgtaatgaattggggtagacgagagaatgaagaattggggtaaaagagatgaggttgt |
28451173 |
T |
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| Q |
112 |
taccgtaactaactgggaaaggtaacccacatgaagtatgaatgtgaatccatgaagttgatttgaagtttgataaatatggtttt-aaattggggaaaa |
210 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||| |
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| T |
28451172 |
taccgt----aactgggaaaggtaacccacatgaagtatgaatgtgaatccatgaagttgatttgaagtttgataaatatggttttgaatttgggaaaaa |
28451077 |
T |
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| Q |
211 |
ttgaacattcaagttttaattgaatta |
237 |
Q |
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||||||||||||||||||||||||||| |
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| T |
28451076 |
ttgaacattcaagttttaattgaatta |
28451050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 14904328 - 14904106
Alignment:
| Q |
12 |
agagatgaggttgttattgttggacttgttataagtaaatgatgtaatgaattggggtagacgagagaatgaagaattggggtaaaagagatgaggttgt |
111 |
Q |
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| T |
14904328 |
agagatgaggttgttattgttggacttgttataagtaaatgatgtaatgaattggggtagacgagagaatgaagaattggggtaaaagagatgaggttgt |
14904229 |
T |
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| Q |
112 |
taccgtaactaactgggaaaggtaacccacatgaagtatgaatgtgaatccatgaagttgatttgaagtttgataaatatggtttt-aaattggggaaaa |
210 |
Q |
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| T |
14904228 |
taccgt----aactgggaaaggtaatccacatgaagtatgaatgtgaatccatgaagttgatttgaagtttgataaatatggttttgaatttggggaaaa |
14904133 |
T |
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| Q |
211 |
ttgaacattcaagttttaattgaatta |
237 |
Q |
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||||||||||||||||||||||||||| |
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| T |
14904132 |
ttgaacattcaagttttaattgaatta |
14904106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 10536341 - 10536563
Alignment:
| Q |
12 |
agagatgaggttgttattgttggacttgttataagtaaatgatgtaatgaattggggtagacgagagaatgaagaattggggtaaaagagatgaggttgt |
111 |
Q |
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| T |
10536341 |
agagatgaggttgttattgttggacttgttataagtaaatgatgtaatgaattggggtagacgagagaatgaagaattggggtaaaagagatgaggttgt |
10536440 |
T |
|
| Q |
112 |
taccgtaactaactgggaaaggtaacccacatgaagtatgaatgtgaatccatgaagttgatttgaagtttgataaatatggtttt-aaattggggaaaa |
210 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||| |
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| T |
10536441 |
taccg----taactgggaaaggtaatccacatgaagtatgaatgtgaatccatgaagttgatttgaagtttgataaacatggttttgaatttgggaaaaa |
10536536 |
T |
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| Q |
211 |
ttgaacattcaagttttaattgaatta |
237 |
Q |
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||||||||||||||||||||||||||| |
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| T |
10536537 |
ttgaacattcaagttttaattgaatta |
10536563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 32538606 - 32538533
Alignment:
| Q |
165 |
gaagttgatttgaagtttgataaatatggttttaaatt-ggggaaaattgaacattcaagttttaattgaatta |
237 |
Q |
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|||||||||| |||| ||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |
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| T |
32538606 |
gaagttgattagaagcttgatgaatatggttttgtatttggggaaaattgaacattgaagttttaattgaatta |
32538533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 18471452 - 18471554
Alignment:
| Q |
121 |
taactgggaaaggtaacccacatgaagtatgaatgtgaatccatgaagttgatttgaagtttgataaatatggttttaaattggggaaaattgaacattc |
220 |
Q |
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||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| ||| || ||||||||||||||||||| |
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| T |
18471452 |
taactgggaaaggta---cacaggaagtatgaatgtgaattcatgaagttgatttgaagttt-----------tttgaatttggggaaaattgaacattg |
18471537 |
T |
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| Q |
221 |
aagttttaattgaatta |
237 |
Q |
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||||||||||||||||| |
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| T |
18471538 |
aagttttaattgaatta |
18471554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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