View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9758_low_22 (Length: 266)

Name: NF9758_low_22
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9758_low_22
NF9758_low_22
[»] chr8 (5 HSPs)
chr8 (16-260)||(1766854-1767113)
chr8 (111-191)||(28783060-28783140)
chr8 (110-207)||(23361628-23361726)
chr8 (111-207)||(16852340-16852437)
chr8 (123-167)||(32793236-32793280)
[»] chr6 (3 HSPs)
chr6 (111-207)||(24641169-24641266)
chr6 (110-190)||(32283782-32283862)
chr6 (113-189)||(32613138-32613214)
[»] chr3 (10 HSPs)
chr3 (111-212)||(4222141-4222243)
chr3 (111-189)||(46518628-46518706)
chr3 (111-190)||(17108895-17108974)
chr3 (138-191)||(8501569-8501622)
chr3 (111-167)||(5499427-5499483)
chr3 (110-190)||(14339609-14339689)
chr3 (111-189)||(31520603-31520681)
chr3 (115-168)||(4844530-4844583)
chr3 (115-168)||(4870226-4870279)
chr3 (111-207)||(36720381-36720478)
[»] scaffold0194 (1 HSPs)
scaffold0194 (121-189)||(13044-13112)
[»] scaffold0187 (2 HSPs)
scaffold0187 (110-190)||(12419-12499)
scaffold0187 (110-190)||(22747-22827)
[»] chr7 (8 HSPs)
chr7 (110-189)||(15137552-15137631)
chr7 (107-189)||(18363692-18363774)
chr7 (111-189)||(35119383-35119461)
chr7 (110-167)||(48771937-48771994)
chr7 (110-190)||(22760862-22760942)
chr7 (110-190)||(43590906-43590986)
chr7 (111-189)||(17041010-17041088)
chr7 (118-170)||(23595736-23595788)
[»] chr5 (4 HSPs)
chr5 (110-189)||(14495803-14495882)
chr5 (111-189)||(29692384-29692462)
chr5 (110-162)||(636596-636648)
chr5 (111-167)||(30109328-30109384)
[»] chr4 (3 HSPs)
chr4 (109-167)||(28635694-28635752)
chr4 (110-170)||(43728394-43728454)
chr4 (109-204)||(46545709-46545805)
[»] chr1 (11 HSPs)
chr1 (111-189)||(8177180-8177258)
chr1 (111-189)||(51814494-51814572)
chr1 (110-167)||(42983394-42983451)
chr1 (138-214)||(1445654-1445730)
chr1 (111-170)||(41508831-41508890)
chr1 (110-189)||(51703778-51703857)
chr1 (111-168)||(40257399-40257456)
chr1 (141-189)||(2799892-2799940)
chr1 (107-167)||(9117115-9117175)
chr1 (138-186)||(9964465-9964513)
chr1 (110-190)||(52116778-52116858)
[»] chr2 (7 HSPs)
chr2 (111-207)||(11251087-11251184)
chr2 (110-181)||(9577835-9577906)
chr2 (111-190)||(39714992-39715071)
chr2 (113-164)||(42222883-42222934)
chr2 (111-214)||(26545840-26545944)
chr2 (111-167)||(29197396-29197452)
chr2 (111-187)||(34041588-34041664)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 1766854 - 1767113
Alignment:
Q  16 gttattagtgtcatgttatttttcatataaacatcatgaagtgagtcaatttaatgttatttttacttaacaatatatcaacttgaagcacaaataaccc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1766854 gttattagtgtcatgttatttttcatataaacatcatgaagtgagtcaatttaatgttatttttacttaacaatatatcaacttgaagcacaaataaccc 1766953  T
Q  116 atttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctccttatgtcaatttaggtgagttaata 215  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1766954 atttgggttggcttggtgggactgacttgagatttggaagtgtgctcctcctcaatatttcaggtttgattctccttatgtcaatttaggtgagttaata 1767053  T
Q  216 attta--------------acttga-gcacaaatattgtttgctcaattaaaacaccaaa 260  Q
    |||||              |||||| ||||||||||||||||||||||||||||||||||    
T  1767054 atttagcttcgtaaaaaaaacttgaagcacaaatattgtttgctcaattaaaacaccaaa 1767113  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 28783060 - 28783140
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctcct 191  Q
    |||||| ||||||||||||||||| | || ||||||| |||| |||||||||||||||||  | ||| ||| |||||||||    
T  28783060 aacccacttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctcatgttcgattctcct 28783140  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 207
Target Start/End: Complemental strand, 23361726 - 23361628
Alignment:
Q  110 taacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc-cttatgtcaatttaggtg 207  Q
    ||||||| |||||||| | |||||| | ||||||| ||| ||| |||||||||||||||||  | |||||||  |||||| ||  ||||||||||||||    
T  23361726 taacccacttgggttgacctggtggtattgacttgggatatgggagtgtgctcctcctcaaggtctcaggttcaattctctctggtgtcaatttaggtg 23361628  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 16852340 - 16852437
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctcctta-tgtcaatttaggtg 207  Q
    |||||| |||||||||| | |||| | || |||| || |||| ||||||||||||||| |  | ||||||| ||||||||||| || |||||||||||    
T  16852340 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctccttagtgccaatttaggtg 16852437  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 32793280 - 32793236
Alignment:
Q  123 ttggcttggtgggactgacttgagatctggaagtgtgctcctcct 167  Q
    |||| ||| ||| |||||||||||||||| |||||||||||||||    
T  32793280 ttggtttgatggtactgacttgagatctgaaagtgtgctcctcct 32793236  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 24641266 - 24641169
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctcctta-tgtcaatttaggtg 207  Q
    |||||||||||||||||||||||| | ||||||| ||||||| ||||||||||||||| |  ||| ||||| ||||||||| | || |||||||||||    
T  24641266 aacccatttgggttggcttggtggtattgacttgggatctgggagtgtgctcctcctcgaggtttaaggttcgattctcctcactgccaatttaggtg 24641169  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 32283862 - 32283782
Alignment:
Q  110 taacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctcc 190  Q
    |||||||||||||||| |||| ||| | || ||||||||||| || | |||||||| || |  ||||||||| ||||||||    
T  32283862 taacccatttgggttgtcttgatggtattggcttgagatctgaaattatgctcctcttcgaggtttcaggttcgattctcc 32283782  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 32613214 - 32613138
Alignment:
Q  113 cccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc 189  Q
    |||| |||||||||| |||||| | ||||||| | ||||| ||||||||||| ||||| || ||| ||| |||||||    
T  32613214 cccacttgggttggcctggtggtattgacttggggtctgggagtgtgctccttctcaagatctcatgttcgattctc 32613138  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 4222141 - 4222243
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc-cttatgtcaatttaggtgag 209  Q
    |||||| |||||||||||| |||| | || |||| ||||||| |||||||||||||||||  | | ||||| ||||||| ||  ||||||||||||||||    
T  4222141 aacccacttgggttggcttagtggtattggcttgggatctgggagtgtgctcctcctcaaagtcttaggttcgattctctctggtgtcaatttaggtgag 4222240  T
Q  210 tta 212  Q
    |||    
T  4222241 tta 4222243  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 46518628 - 46518706
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc 189  Q
    |||||| |||||||||| | |||| | || |||| ||||||| |||||||||||||||||  |||||||||||||||||    
T  46518628 aacccacttgggttggcatagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggtttgattctc 46518706  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 17108974 - 17108895
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctcc 190  Q
    |||||| ||||||| | ||||||| | ||||| ||||| ||| |||||||||||||||||  | ||||||||||||||||    
T  17108974 aacccacttgggttagtttggtggtattgactggagatgtgggagtgtgctcctcctcaaggtctcaggtttgattctcc 17108895  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 8501622 - 8501569
Alignment:
Q  138 tgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctcct 191  Q
    ||||||||||||||| |||||||||||||||||  |||||||||  ||||||||    
T  8501622 tgacttgagatctgggagtgtgctcctcctcaaagtttcaggttcaattctcct 8501569  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 5499483 - 5499427
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcct 167  Q
    |||||| |||||||||| |||||| | ||||||||||||||  ||||||||||||||    
T  5499483 aacccacttgggttggcctggtggtattgacttgagatctgagagtgtgctcctcct 5499427  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 14339609 - 14339689
Alignment:
Q  110 taacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctcc 190  Q
    ||||||| |||| ||||| |||||| | || |||| ||| ||| |||||||||||||||||| | ||||||| ||||||||    
T  14339609 taacccagttggattggcctggtggtattggcttgggatttgggagtgtgctcctcctcaatgtctcaggttcgattctcc 14339689  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 31520681 - 31520603
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc 189  Q
    |||||| |||||||||| |||||| | || |||| ||||||| ||||||||||||||| |  | | |||||||||||||    
T  31520681 aacccacttgggttggcctggtggcattggcttgggatctgggagtgtgctcctcctcgaggtcttaggtttgattctc 31520603  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 4844583 - 4844530
Alignment:
Q  115 catttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctc 168  Q
    ||||||||||||  |||||| | ||||||| ||||||| |||||||||||||||    
T  4844583 catttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctc 4844530  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 4870279 - 4870226
Alignment:
Q  115 catttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctc 168  Q
    ||||||||||||  |||||| | ||||||| ||||||| |||||||||||||||    
T  4870279 catttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctc 4870226  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 36720381 - 36720478
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc-cttatgtcaatttaggtg 207  Q
    |||||| |||||||||  |||||| | || |||| ||| ||| ||||||||||||||| |  ||||||||| ||||||| ||  ||||||||||||||    
T  36720381 aacccacttgggttggtctggtggtattggcttgggatatgggagtgtgctcctcctcgaggtttcaggttcgattctctctagtgtcaatttaggtg 36720478  T

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Target: scaffold0194 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 13112 - 13044
Alignment:
Q  121 ggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc 189  Q
    |||||||||||||| | || |||||||||||| |||||||||||||||||  | ||||||| |||||||    
T  13112 ggttggcttggtggtattggcttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctc 13044  T

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Target: scaffold0187 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 12499 - 12419
Alignment:
Q  110 taacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctcc 190  Q
    |||||||||||||||||| |||||| | |||||||| | ||| ||||||| ||||||||||  ||||| ||| ||||||||    
T  12499 taacccatttgggttggcctggtggtattgacttgaaacctgaaagtgtgatcctcctcaaagtttcaagttcgattctcc 12419  T

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Target: scaffold0187; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 22827 - 22747
Alignment:
Q  110 taacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctcc 190  Q
    |||||||||||||||||| |||||| | |||||||| | ||| ||||||| ||||||||||  ||||| ||| ||||||||    
T  22827 taacccatttgggttggcctggtggtattgacttgaaacctgaaagtgtgatcctcctcaaagtttcaagttcgattctcc 22747  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 15137552 - 15137631
Alignment:
Q  110 taacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc 189  Q
    ||||||| |||||||||| |||||| ||||||||| ||| | | |||||||||||||||||  | ||||||| |||||||    
T  15137552 taacccacttgggttggcctggtggtactgacttgggatttaggagtgtgctcctcctcaaggtctcaggttagattctc 15137631  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 18363692 - 18363774
Alignment:
Q  107 aaataacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc 189  Q
    |||||||||| |||||||||| | |||| |  | |||||||| ||| |||||||||||||||||  | |||||||||||||||    
T  18363692 aaataacccacttgggttggcctagtggtataggcttgagatttgggagtgtgctcctcctcaaggtctcaggtttgattctc 18363774  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 35119383 - 35119461
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc 189  Q
    ||||||||||||||||| | |||| | ||||||| |||||||  || ||||| ||||||| |||||||||| |||||||    
T  35119383 aacccatttgggttggcctagtggtattgacttgggatctgggtgtatgctcatcctcaagatttcaggttcgattctc 35119461  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 48771937 - 48771994
Alignment:
Q  110 taacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcct 167  Q
    ||||||| ||||||||||||||||| | || |||| ||||||| ||||||||||||||    
T  48771937 taacccacttgggttggcttggtggtattggcttgggatctgggagtgtgctcctcct 48771994  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 22760862 - 22760942
Alignment:
Q  110 taacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctcc 190  Q
    ||||||| |||||||||  |||||| | ||||||| || |||| |||||||||||||||||  | ||||||| ||||||||    
T  22760862 taacccacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcc 22760942  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 43590906 - 43590986
Alignment:
Q  110 taacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctcc 190  Q
    ||||||| |||||||||| |||||| | || |||| ||  ||| |||||||||||||||||| | ||||||| ||||||||    
T  43590906 taacccagttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggttcgattctcc 43590986  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 17041088 - 17041010
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc 189  Q
    |||||| |||||||||  | |||| | || |||| |||||||||||||||||||||||||  | ||||||| |||||||    
T  17041088 aacccacttgggttggtctagtggcattggcttgggatctggaagtgtgctcctcctcaaggtctcaggttcgattctc 17041010  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 23595736 - 23595788
Alignment:
Q  118 ttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaa 170  Q
    |||||||||  |||||| | ||||||||||||| | |||||||||||||||||    
T  23595736 ttgggttggtctggtggtattgacttgagatctcggagtgtgctcctcctcaa 23595788  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 14495882 - 14495803
Alignment:
Q  110 taacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc 189  Q
    |||||||||||||||||  |||||| | ||||||| ||||||| ||||||||||||||| |  | |||| ||||||||||    
T  14495882 taacccatttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcagatttgattctc 14495803  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 29692462 - 29692384
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc 189  Q
    ||||||||||||||||  |||||| | ||  ||| ||||||| |||||||||||||||||  | |||||||| ||||||    
T  29692462 aacccatttgggttggtctggtggtattggattgggatctgggagtgtgctcctcctcaaagtctcaggtttaattctc 29692384  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 636648 - 636596
Alignment:
Q  110 taacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctc 162  Q
    |||||||||||| ||||  || ||| | |||||||||||||||||||||||||    
T  636648 taacccatttggattggtatgatggtattgacttgagatctggaagtgtgctc 636596  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 30109384 - 30109328
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcct 167  Q
    |||||| ||||||||||||||||| | || |||| || |||| ||||||||||||||    
T  30109384 aacccacttgggttggcttggtggtattggcttgtgacctgggagtgtgctcctcct 30109328  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 28635694 - 28635752
Alignment:
Q  109 ataacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcct 167  Q
    |||||||| |||||||| | |||||| ||||||||| ||||||| ||||||||||||||    
T  28635694 ataacccacttgggttgtcctggtggtactgacttgggatctgggagtgtgctcctcct 28635752  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 43728394 - 43728454
Alignment:
Q  110 taacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaa 170  Q
    |||| ||||||||||||  |||||| | ||||||  ||||||| |||||||||||||||||    
T  43728394 taactcatttgggttggtatggtggtattgacttatgatctgggagtgtgctcctcctcaa 43728454  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 46545709 - 46545805
Alignment:
Q  109 ataacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc-cttatgtcaatttag 204  Q
    |||||||| |||||||||| | |||| | || ||||||| |||  ||||||||||||||||| || |||| || |||| || || ||||||||||||    
T  46545709 ataacccacttgggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatctcagattcgattttctctgatgtcaatttag 46545805  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 8177258 - 8177180
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc 189  Q
    |||||||||| |||||| | |||| | || |||| ||||||| |||||||||||||||||  ||||||||| |||||||    
T  8177258 aacccatttgagttggcctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggttcgattctc 8177180  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 51814494 - 51814572
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc 189  Q
    |||||| |||||||||| || ||| | ||||||||||||||  |||||||||||||||||  | ||||||| |||||||    
T  51814494 aacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctc 51814572  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 42983451 - 42983394
Alignment:
Q  110 taacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcct 167  Q
    ||||| |||||||||||| |||||| | ||||||||||||||| |||||| |||||||    
T  42983451 taacctatttgggttggcatggtggtattgacttgagatctgggagtgtggtcctcct 42983394  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 1445730 - 1445654
Alignment:
Q  138 tgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctccttatgtcaatttaggtgagttaat 214  Q
    |||||| ||||||| || | |||||||||||||  ||| ||| | ||||| ||||||||||||||| ||||||||||    
T  1445730 tgacttaagatctgaaaatatgctcctcctcaaagttttagggtcgattccccttatgtcaatttaagtgagttaat 1445654  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 41508831 - 41508890
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaa 170  Q
    |||||| |||||||||| |||||| ||||  ||| ||||||| |||||||||||||||||    
T  41508831 aacccacttgggttggcctggtggtactggtttgggatctgggagtgtgctcctcctcaa 41508890  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 51703778 - 51703857
Alignment:
Q  110 taacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc 189  Q
    |||||||||||||||||  | |||| | || ||||  |||||| |||||||||||||||||  ||||||||| |||||||    
T  51703778 taacccatttgggttggtctagtggtattggcttggaatctgggagtgtgctcctcctcaaagtttcaggttcgattctc 51703857  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 40257399 - 40257456
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctc 168  Q
    |||||| |||||||||| |||||| | || ||||||| |||| |||||||||||||||    
T  40257399 aacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctc 40257456  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 2799892 - 2799940
Alignment:
Q  141 cttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc 189  Q
    |||||||||||| |||||||||||||||||  | ||||||| |||||||    
T  2799892 cttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctc 2799940  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 9117115 - 9117175
Alignment:
Q  107 aaataacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcct 167  Q
    |||||||||||||||||||||  | ||| |  | |||| ||||||||||||||||||||||    
T  9117115 aaataacccatttgggttggccggttggtatgggcttgggatctggaagtgtgctcctcct 9117175  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 9964465 - 9964513
Alignment:
Q  138 tgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgatt 186  Q
    ||||||| ||||||| ||||||||| |||||||| | ||||||||||||    
T  9964465 tgacttgggatctgggagtgtgctcttcctcaatgtctcaggtttgatt 9964513  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 52116858 - 52116778
Alignment:
Q  110 taacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctcc 190  Q
    ||||||| |||||||||| |||||| | || |||| ||  ||| |||||||||||||||||| | |||||||  |||||||    
T  52116858 taacccagttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggttcaattctcc 52116778  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 11251087 - 11251184
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctc-cttatgtcaatttaggtg 207  Q
    |||||| || ||||||||| |||| | || |||| ||  |||||||||||||||||||||  | ||||||||||||||| ||  ||||||||||||||    
T  11251087 aacccacttaggttggcttagtggtattggcttgggacttggaagtgtgctcctcctcaaggtctcaggtttgattctctctggtgtcaatttaggtg 11251184  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 9577835 - 9577906
Alignment:
Q  110 taacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtt 181  Q
    |||| |||||||||||||   |||| | |||||||| || | |||||||||||||||||||||| |||||||    
T  9577835 taactcatttgggttggcacagtggtattgacttgaaatttagaagtgtgctcctcctcaatatctcaggtt 9577906  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 39714992 - 39715071
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctcc 190  Q
    |||||| |||||||||| |||||| | ||||||| || |||| ||||||||||||||| |  | ||||||| ||||||||    
T  39714992 aacccacttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctcc 39715071  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 42222883 - 42222934
Alignment:
Q  113 cccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcct 164  Q
    ||||||||||||||| |||||| | |||| |||||| |||||||||||||||    
T  42222883 cccatttgggttggcatggtggtattgacctgagatatggaagtgtgctcct 42222934  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 26545840 - 26545944
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattctcct-tatgtcaatttaggtgag 209  Q
    |||||| ||||||||| ||||||| | |  |||| ||||||||||||||||||| ||| |  | ||| ||||||||||| |  || |||||||||||| |    
T  26545840 aacccacttgggttggtttggtggtattagcttgggatctggaagtgtgctccttctcgaggtctcaagtttgattctcttcgatatcaatttaggtggg 26545939  T
Q  210 ttaat 214  Q
    |||||    
T  26545940 ttaat 26545944  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 29197452 - 29197396
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcct 167  Q
    |||||| ||||||||||||||||| | ||||||| ||  ||| ||||||||||||||    
T  29197452 aacccacttgggttggcttggtggtattgacttgggacttgggagtgtgctcctcct 29197396  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 34041664 - 34041588
Alignment:
Q  111 aacccatttgggttggcttggtgggactgacttgagatctggaagtgtgctcctcctcaatatttcaggtttgattc 187  Q
    |||||| |||||||||| | |||| | ||||||  ||||||  |||||||||||||||||  | |||||||||||||    
T  34041664 aacccacttgggttggcctagtggtattgacttaggatctgagagtgtgctcctcctcaaggtctcaggtttgattc 34041588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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