View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9758_low_28 (Length: 238)
Name: NF9758_low_28
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 49208743 - 49208520
Alignment:
| Q |
1 |
atgaatccatcactgctcttctcattgtaagtactaagtagtaatattatgttcttcatcaataatcaatatactatgctttcattgtatgatatattat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49208743 |
atgaatccatcactgctcttctcattgtaagtactaagtagtaatattatgttcttcatcaataatcaatatactatgctttcattgtatgatatattat |
49208644 |
T |
|
| Q |
101 |
tgatggcatggcagggtttgtgtactggggtgttaatattgtttacaactggaggaagaagctctcatataatggttttcagcgaagatcttttctttat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49208643 |
tgatggcatggcagggtttgtgtactggggtgttaatattgtttacaactggaggaagaagctctcatataatggttttcagcgaagatcttttctttat |
49208544 |
T |
|
| Q |
201 |
ttaccttctcccacccatcatttt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
49208543 |
ttaccttctcccacccatcatttt |
49208520 |
T |
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