View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9758_low_3 (Length: 457)
Name: NF9758_low_3
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 7e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 34 - 353
Target Start/End: Original strand, 10802380 - 10802707
Alignment:
| Q |
34 |
ttgaaattattaacctctgtgaacacactgaattggttacctgatagtacaccacctagtttcttcatggaaaggtctacggaagttacaattgagttat |
133 |
Q |
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| T |
10802380 |
ttgaaatcaataacctctgtgaagacactgagttgcttacctgatagtacaccacctagtttcttcatggaaaggtctatggaagttacatttgagtcct |
10802479 |
T |
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| Q |
134 |
tgttacacttgatcccagaccaagagcatgcataggagcttccactttcaattaagtttgctccaaagggcacaacccagtcatgcaagctattattatc |
233 |
Q |
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| T |
10802480 |
tgttacacttgatgcctgaccaagaacatgcataggaacttccacttttagctaagttccctccagaggggaccacccagtcatgcaggctattatcatt |
10802579 |
T |
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| Q |
234 |
atctataaactcagattttagacttaggagtgcttgtgaataaggatcaactgctaaa------gatgatgataagatgaagttagaga--agattaatg |
325 |
Q |
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| T |
10802580 |
gtctataagctcagattttagacttagtagtgcttgtgaataaggatcaattgctaaagatgacgatgatgataagatgaaagtagagaggagattaatg |
10802679 |
T |
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| Q |
326 |
aaacagaagaattttaaaatcttcattg |
353 |
Q |
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| T |
10802680 |
aagtagaagaatttgaaaatctccattg |
10802707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 21939744 - 21939593
Alignment:
| Q |
13 |
gagaagagattataactcatgttgaaattattaacctctgtgaacacactgaattggttacctgatagtacaccacctagtttcttcatggaaaggtcta |
112 |
Q |
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| T |
21939744 |
gagaagaaattatagcttatattgaaatcaataacctttgtgaacacactgaattggttacctgatagtacaccacctagtttcttcatggaaaggtcta |
21939645 |
T |
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| Q |
113 |
cggaagttacaattgagttattgttacacttgatcccagaccaagagcatgc |
164 |
Q |
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| T |
21939644 |
tggaagttacaattgagtcattgtcacacttgatgccagaccaagaacatgc |
21939593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 192 - 354
Target Start/End: Complemental strand, 21939595 - 21939431
Alignment:
| Q |
192 |
tgctccaaagggcacaacccagtcatgcaagctattattatcatctataaactcagattttagacttaggagtgcttgtgaataaggatcaactgctaaa |
291 |
Q |
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||||||| |||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||||| |
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| T |
21939595 |
tgctccagagggcagaacccagccatgcaagctattattatcatctatgaactcagattttagactgaggagtgcttgtgaatatggatcaattgctaaa |
21939496 |
T |
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| Q |
292 |
gatgatgataagatgaagttag--agaagattaatgaaacagaagaattttaaaatcttcattgg |
354 |
Q |
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| T |
21939495 |
gatgatgataagatgaaagtagtaaggagattaatgaagtagaagaatttgaaaatctccattgg |
21939431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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