View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9758_low_31 (Length: 232)
Name: NF9758_low_31
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23873637 - 23873862
Alignment:
| Q |
1 |
caatgataattttaaccacatcggccacatttgtttgtannnnnnnncttaatatcgaaactcactttgcatctgcaaccgtaatttaaaaacatgattt |
100 |
Q |
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| T |
23873637 |
caatgataattttaaccacatcggccaaatttgtttgtattttttt-cttaatatcgaaactcactttgcatctgcaaccgtaatttaaaaccatgattt |
23873735 |
T |
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| Q |
101 |
atatcattaatacacagatgaaaatga------tcattttcttctaaattgtatcagaaccttgctcacctttccaaaaggtgaaaccaattgttgaagt |
194 |
Q |
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| T |
23873736 |
atatcattaatacacagaagaaaatgatcatgatcattttcttctgtattgtatcagaaccttgctcacctttccaaaaggtgaaaccaattgttgaagt |
23873835 |
T |
|
| Q |
195 |
gcagtgattctgtcccccatcttctct |
221 |
Q |
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| T |
23873836 |
gcagtgattctgtcccccatcttctct |
23873862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 23873550 - 23873584
Alignment:
| Q |
1 |
caatgataattttaaccacatcggccacatttgtt |
35 |
Q |
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| T |
23873550 |
caatgataattttaaccacatcggtcacatttgtt |
23873584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 34349106 - 34349161
Alignment:
| Q |
162 |
acctttccaaaaggtgaaaccaattgttgaagtgcagtgattctgtcccccatctt |
217 |
Q |
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| T |
34349106 |
acctttccaaaaggagacactaattgttggagtgcagtgattctgtctcccatctt |
34349161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 2636415 - 2636354
Alignment:
| Q |
160 |
tcacctttccaaaaggtgaaaccaattgttgaagtgcagtgattctgtcccccatcttctct |
221 |
Q |
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|||||||||| ||||||||||||||||| ||||| || ||||| | |||||| | ||||||| |
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| T |
2636415 |
tcacctttccgaaaggtgaaaccaattgctgaagggctgtgatccggtcccctagcttctct |
2636354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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