View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9758_low_32 (Length: 231)
Name: NF9758_low_32
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 18770991 - 18771196
Alignment:
| Q |
12 |
aaacataggtcaatgtctttgatataaattttgagccaaatacataaatttttgcttatagaattgagtagaatgttatgtagctgaccaaggttctcgg |
111 |
Q |
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| T |
18770991 |
aaacataggtcaatgtctttgatataaattttgagccaaataaataaatttttgcttatagaattgagtagaatgttatgtagctgaccaaggttctcgg |
18771090 |
T |
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| Q |
112 |
tattgggaagcaacattggatccattgctatacagaaattaagtattttttaaatgaaaaaacgagaagactagctaatcccactgtacgtataaatctt |
211 |
Q |
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| T |
18771091 |
tattgggaagcaacattggatccattgccatacagaaattaagtattttttaaatgaaaaaacgagaagactagctaatcccactgtacgtataaatctt |
18771190 |
T |
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| Q |
212 |
gatatt |
217 |
Q |
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|||||| |
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| T |
18771191 |
gatatt |
18771196 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 2884322 - 2884286
Alignment:
| Q |
29 |
tttgatataaattttgagccaaatacataaatttttg |
65 |
Q |
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| T |
2884322 |
tttgatataaattttgaaccaaatacattaatttttg |
2884286 |
T |
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