View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9758_low_33 (Length: 229)
Name: NF9758_low_33
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_low_33 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 31866239 - 31866465
Alignment:
| Q |
3 |
agaaaagtgtgtcgcttcagctggtaaatttgtagaactaagactttcttgtaccgcagtctcttcctaggttggctcatccaatccccaagttattgag |
102 |
Q |
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| T |
31866239 |
agaaaagtgtgttgcttctgctggaaaatttgtagaattaagactttcttgtaccgcagtctcttcctaggttggctcatccaatccccaagttattgag |
31866338 |
T |
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| Q |
103 |
ccatagcagctaggttggaaatggaaaaactgattgttaagggtttaacttccgttagatttttcttcttctttgggttctatttgctaatcctaggtat |
202 |
Q |
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| T |
31866339 |
ccatagcagctaggttggaaatggaaaaactgattgttaagggtttaacttccgttagattttttttcttctttgggttctatttgctaatcctaggtat |
31866438 |
T |
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| Q |
203 |
atgatatttttgcccttgaatttatta |
229 |
Q |
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| T |
31866439 |
atgatatttttgcccttgaacttatta |
31866465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 31856346 - 31856436
Alignment:
| Q |
3 |
agaaaagtgtgtcgcttcagctggtaaatttgtagaactaagactttcttgtaccgcagtctcttcctaggttggctcatccaatccccaa |
93 |
Q |
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| T |
31856346 |
agaaaagtgtgttgctttggctgaaaaatttgtagaactaagactttcttgtatcgcagtctcttcctaggttggctcatcgaatccccaa |
31856436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 31856494 - 31856601
Alignment:
| Q |
117 |
ttggaaatggaaaaactgattgttaagggtttaacttccgttagatttttcttcttctttgggttctatttgctaatcctaggtatatgatatttttgcc |
216 |
Q |
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| T |
31856494 |
ttggaaatggaaaaactgattgtaaagtaattaacttccataagactttt----ttctttgggttctatttgctaatcctaggtatatgatatttctact |
31856589 |
T |
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| Q |
217 |
cttgaatttatt |
228 |
Q |
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| T |
31856590 |
cttgaacttatt |
31856601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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