View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9758_low_38 (Length: 218)
Name: NF9758_low_38
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 1513877 - 1513694
Alignment:
| Q |
14 |
tgttacacactaatttcttttgcaatcccgatttcgttcctgcgttgggttcaatgggttgtgcttctggtgtttattctctctatgcatatggtttcat |
113 |
Q |
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| T |
1513877 |
tgttacacactaatttcttttgcaatcctgatttcgttcctccgttgggttcactgggttgtgcttctggtgtttatcctctctatgcatatggtttcat |
1513778 |
T |
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| Q |
114 |
tcaactggatttcgatctagtatgtttttaccacattttgttactactcattataatacccgtttagggatgatgtatacgtgg |
197 |
Q |
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| T |
1513777 |
tcaactggatttcggtctagtatgtttttaccatattttgttactactcgttgtaatacccgtttagggatgatgtatacgtgg |
1513694 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 42243516 - 42243456
Alignment:
| Q |
96 |
ctatgcatatggtttcattcaactggatttcgatctagtatgtttttaccacattttgtta |
156 |
Q |
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| T |
42243516 |
ctatgcatatggtttccttaaactggatttcggtctagtgtgtctttgccacattttgtta |
42243456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 30827153 - 30827097
Alignment:
| Q |
105 |
tggtttcattcaactggatttcgatctagtatgtttttaccacattttgttactact |
161 |
Q |
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| T |
30827153 |
tggtttccttaaactggatttcgatctagtacgtctttaccatattttgttagtact |
30827097 |
T |
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