View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9758_low_39 (Length: 216)
Name: NF9758_low_39
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_low_39 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 32304609 - 32304424
Alignment:
| Q |
13 |
caaaggaatttgcattaagtgaaaccgaaattgttagtaaactggaatagcatctagagtcagaagcattttatacataaatcctaaagctgagtatcaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||| | ||||||| |
|
|
| T |
32304609 |
caaaggaatttgcattaagtgaaaccgaaattgttagaaaactataatagcatcaagagtcagaagcattttttacataaatcctaaagcag-gtatcaa |
32304511 |
T |
|
| Q |
113 |
ggaatttatttatataactcatttgtgcgccaataatttccaaggaatttaaatcgacacgttgactttcaatcgggccacgatttt |
199 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32304510 |
ggaatttgtttatataactcatttgcgcgccaataatttccaaggaatttaaatcgacacgttgacttccaatcgggccacgatttt |
32304424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 35427245 - 35427334
Alignment:
| Q |
21 |
tttgcattaagtgaaaccgaaattgttagtaaactggaatagcatctagagtcagaagcattttatacataaatcctaaagctgagtatca |
111 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||| | |||| |||| |||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
35427245 |
tttgcattaagtgaaaccgaatttgttagaaaactggaacaacatcaagagatggaagcattttatacattaatcctaaagc-gagtatca |
35427334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 25421270 - 25421215
Alignment:
| Q |
29 |
aagtgaaaccgaaattgttagtaaactggaatagcatctagagtcagaagcatttt |
84 |
Q |
| |
|
|||||||| |||| || |||| |||||||||||||||| ||| ||||||||||||| |
|
|
| T |
25421270 |
aagtgaaatcgaatttattagaaaactggaatagcatcaagaatcagaagcatttt |
25421215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University