View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9758_low_40 (Length: 207)

Name: NF9758_low_40
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9758_low_40
NF9758_low_40
[»] chr3 (11 HSPs)
chr3 (18-185)||(4781162-4781327)
chr3 (19-185)||(4776532-4776696)
chr3 (33-185)||(4771804-4771954)
chr3 (44-185)||(3257786-3257927)
chr3 (68-182)||(32201992-32202107)
chr3 (44-185)||(3256570-3256712)
chr3 (69-183)||(33798264-33798380)
chr3 (69-169)||(16217346-16217446)
chr3 (44-170)||(3285322-3285449)
chr3 (96-185)||(3404164-3404254)
chr3 (85-185)||(3388484-3388585)
[»] chr4 (9 HSPs)
chr4 (19-178)||(7703203-7703363)
chr4 (21-169)||(11488459-11488607)
chr4 (43-182)||(8913117-8913257)
chr4 (114-182)||(30064930-30064998)
chr4 (43-186)||(41953566-41953711)
chr4 (51-186)||(20572200-20572336)
chr4 (69-181)||(21799028-21799143)
chr4 (53-186)||(51462266-51462399)
chr4 (18-94)||(19940193-19940268)
[»] chr7 (10 HSPs)
chr7 (69-179)||(5048480-5048590)
chr7 (18-170)||(40504470-40504623)
chr7 (19-186)||(16254013-16254181)
chr7 (51-180)||(7229334-7229465)
chr7 (69-159)||(16300354-16300444)
chr7 (59-124)||(20176345-20176410)
chr7 (19-77)||(16299584-16299642)
chr7 (51-101)||(19589834-19589884)
chr7 (51-96)||(2475814-2475859)
chr7 (146-185)||(18398133-18398173)
[»] chr2 (8 HSPs)
chr2 (68-181)||(5370754-5370869)
chr2 (18-168)||(30972913-30973063)
chr2 (51-158)||(24576705-24576813)
chr2 (53-186)||(33855131-33855265)
chr2 (18-124)||(16341478-16341583)
chr2 (48-109)||(25894209-25894270)
chr2 (20-77)||(17270469-17270526)
chr2 (18-120)||(13232016-13232118)
[»] chr6 (2 HSPs)
chr6 (38-186)||(21671024-21671172)
chr6 (38-186)||(21678440-21678588)
[»] chr5 (3 HSPs)
chr5 (51-178)||(24884282-24884409)
chr5 (43-172)||(13808125-13808256)
chr5 (54-129)||(16511852-16511929)
[»] chr8 (2 HSPs)
chr8 (45-151)||(15257383-15257488)
chr8 (42-114)||(25234454-25234526)
[»] chr1 (3 HSPs)
chr1 (51-186)||(19882278-19882409)
chr1 (47-96)||(15245068-15245117)
chr1 (51-96)||(33079573-33079618)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 8e-60; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 4781327 - 4781162
Alignment:
Q  18 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtt 117  Q
    |||||||| || || | ||||||| ||||||||||||||| ||||| ||||||  |||||||||| ||||||||||||||||||||||||||||||||||    
T  4781327 ctgtggagctaaagctacgcgtagattttcagcagaaaacttgtttacataaa--taaaataaatcatttgtcacaacagtaaatataaaaggttaagtt 4781230  T
Q  118 tgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttat 185  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  4781229 tgggaaagcagtaaaaggttttagaaaatctaaagatggaaagtctggtttaaactaggttcagttat 4781162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 4776696 - 4776532
Alignment:
Q  19 tgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagttt 118  Q
    ||||||| || || |||| |||| | ||||| ||||||| ||||| ||||||  |||||| ||| |||||||||||||||||||||||||| ||||||||    
T  4776696 tgtggagctaaagcttcgtgtagctgttcagtagaaaacatgtttacataaa--taaaatgaatcatttgtcacaacagtaaatataaaagattaagttt 4776599  T
Q  119 gggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttat 185  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  4776598 gggaaagcagtaaaaggttttagaaaatctcaagatggaaagtctggtttaaactaggtccagttat 4776532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 4771954 - 4771804
Alignment:
Q  33 ttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaa 132  Q
    |||| |||| ||||||| ||||||| ||||| ||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4771954 ttcgagtagcttttcagtagaaaacttgtttacataaa--taaaataaatcatttgtcacaacagtaaatataaaaggttaagtttgggaaagaagtaaa 4771857  T
Q  133 aggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttat 185  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||| |||||    
T  4771856 aggttttagaaaatctcaagatggaaagtacggtttaaattaggttcggttat 4771804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 3257927 - 3257786
Alignment:
Q  44 tttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaa 143  Q
    |||||||||||||| ||||||||  ||||| ||||||||  |||||| ||| ||||||||||||| ||||||||| |||||  ||| ||| | |||||||    
T  3257927 tttcagcagaaaacatgtttgcaggaaaatcaaataaatattttgtcgcaatagtaaatataaaatgttaagttttggaaaatagttaaaaggtttagaa 3257828  T
Q  144 aatctcaagatggaaagtgtggtttaaactaggttcagttat 185  Q
    | ||| ||||||||||||||||||||| ||||| ||||||||    
T  3257827 attcttaagatggaaagtgtggtttaagctaggctcagttat 3257786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 32201992 - 32202107
Alignment:
Q  68 aaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtt 167  Q
    ||||||||||||||| ||||||| ||||||||||  ||||| ||| ||||| |||||||||| ||||  |||||||||||||||||||||| ||||||||    
T  32201992 aaaaataaaataaatcatttgtcgcaacagtaaaattaaaaagtttagtttaggaaagcagttaaagtctttagaaaatctcaagatggaaggtgtggtt 32202091  T
Q  168 ta-aactaggttcagt 182  Q
    || ||| |||||||||    
T  32202092 tagaacaaggttcagt 32202107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 3256712 - 3256570
Alignment:
Q  44 tttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcag-taaaaggttttaga 142  Q
    ||||| || ||||| ||||||||  ||||| ||||||||  |||| |||||| |||||| ||||||||||||||| ||||| ||| ||||| | ||||||    
T  3256712 tttcaacataaaacttgtttgcaagaaaatcaaataaatcttttgccacaacggtaaatctaaaaggttaagttttggaaaacagttaaaatgatttaga 3256613  T
Q  143 aaatctcaagatggaaagtgtggtttaaactaggttcagttat 185  Q
    || |||  |||||||||||||||||||| ||||||||||||||    
T  3256612 aattctttagatggaaagtgtggtttaagctaggttcagttat 3256570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 33798380 - 33798264
Alignment:
Q  69 aaaataaaataaattatttgtcacaacagtaaatataaaaggttaa-gtttgggaaagcagt--aaaaggttttagaaaatctcaagatggaaagtgtgg 165  Q
    |||||||||||||| |||||||||||||  |||||||||| ||||| | |||||||| || |  ||||||||| ||||| |||||||||||||| |||||    
T  33798380 aaaataaaataaatcatttgtcacaacaacaaatataaaaagttaaaggttgggaaaacaatttaaaaggttt-agaaattctcaagatggaaaatgtgg 33798282  T
Q  166 tttaaactaggttcagtt 183  Q
    ||||||||||||||||||    
T  33798281 tttaaactaggttcagtt 33798264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 16217346 - 16217446
Alignment:
Q  69 aaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggttt 168  Q
    ||||||||||||| ||||| |||||||||||||  | ||| ||||| |||||||||||||| ||||  |||||||||||||||||||||| ||| |||||    
T  16217346 aaaataaaataaaatatttttcacaacagtaaaagtgaaaagttaaatttgggaaagcagttaaagtctttagaaaatctcaagatggaaggtgcggttt 16217445  T
Q  169 a 169  Q
    |    
T  16217446 a 16217446  T

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Target: chr3; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 3285449 - 3285322
Alignment:
Q  44 tttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcag-taaaaggttttaga 142  Q
    |||||||| ||||| |||||| |  ||||| ||||||||  |||||  ||| ||||||||||||||||||||||| ||||| ||| ||||| | ||||||    
T  3285449 tttcagcataaaacttgtttgtaggaaaatcaaataaatcttttgttgcaatagtaaatataaaaggttaagttttggaaaacagttaaaaagatttaga 3285350  T
Q  143 aaatctcaagatggaaagtgtggtttaa 170  Q
    || ||| |||||||||||||||||||||    
T  3285349 aattcttaagatggaaagtgtggtttaa 3285322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 3404254 - 3404164
Alignment:
Q  96 agtaaatataaaaggttaagtttgggaaagcagt-aaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttat 185  Q
    |||||||||||||||||| |||| ||||| |||| |||| | |||| ||| |||||||||| |||||||||||||||||| ||||||||||    
T  3404254 agtaaatataaaaggttatgttttggaaaacagttaaaaagatttacaaattctcaagatgaaaagtgtggtttaaactaagttcagttat 3404164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 3388585 - 3388484
Alignment:
Q  85 tttgtcacaacagtaaatataaaaggttaagtttgggaaagcagt-aaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagtt 183  Q
    |||||||||||||||||| ||| |||||| |||| ||||| |||| |||| | |||| ||| |||||||||| |||||||||||||||||| ||||| ||    
T  3388585 tttgtcacaacagtaaatctaataggttatgttttggaaaacagttaaaaagatttacaaattctcaagatgaaaagtgtggtttaaactaagttcaatt 3388486  T
Q  184 at 185  Q
    ||    
T  3388485 at 3388484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 7703363 - 7703203
Alignment:
Q  19 tgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaa-ggttaagtt 117  Q
    ||||||| ||||| |||| |||| ||||||| ||||| | |||||| |  |||||||||||| | ||||||||||||||||||||||||| |||||||||    
T  7703363 tgtggagctatagcttcgtgtagcttttcaggagaaagcttgtttgtacgaaaataaaataagtcatttgtcacaacagtaaatataaaaaggttaagtt 7703264  T
Q  118 tgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggtt 178  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  7703263 tgggaaaccagtaaaaggttttagaaaatctcaagatggaaattgtgttttaaactaggtt 7703203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 11488459 - 11488607
Alignment:
Q  21 tggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgg 120  Q
    ||||| ||||| ||||||||  |||| |||| ||||| |||||| | ||||||||||||||  |||||| |||||| |||| ||||||||||||||||||    
T  11488459 tggagctatagcttcgcgtacctttttagcaaaaaacttgtttgtagaaaaataaaataaaacatttgttacaacaataaacataaaaggttaagtttgg 11488558  T
Q  121 gaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggttta 169  Q
    ||||| ||| ||||    | |||||||||||||||||||| ||||||||    
T  11488559 gaaagaagttaaagtccatcgaaaatctcaagatggaaagcgtggttta 11488607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 8913257 - 8913117
Alignment:
Q  43 ttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttaga 142  Q
    ||||||||||||||| ||| ||   || |||||||||||  ||||||| ||| ||||||  ||||| |||||| || |||||||||| ||||   |||||    
T  8913257 ttttcagcagaaaacttgtgtggtgaagaataaaataaaacatttgtcgcaatagtaaaagtaaaaagttaagcttaggaaagcagttaaagtccttaga 8913158  T
Q  143 aaatctcaagatggaaagtgtggttta-aactaggttcagt 182  Q
    |||||||||||||||| |||||||||| ||| |||||||||    
T  8913157 aaatctcaagatggaaggtgtggtttagaacaaggttcagt 8913117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 30064930 - 30064998
Alignment:
Q  114 agtttgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagt 182  Q
    ||||||| ||| |||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||    
T  30064930 agtttggaaaaacagtaaaaagttttaaaaaatctcaagattgaaagtgtggtttaaactaggttcagt 30064998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 43 - 186
Target Start/End: Original strand, 41953566 - 41953711
Alignment:
Q  43 ttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaa--aggtttta 140  Q
    ||||||| ||||||| | ||||||  |||||||||||||| |||||||||||||||||||||||||| | |||  |||||||||| | ||     |||||    
T  41953566 ttttcagtagaaaacttatttgcaagaaaataaaataaatcatttgtcacaacagtaaatataaaagttaaaggctgggaaagcaattaattttttttta 41953665  T
Q  141 gaaaatctcaagatggaaagtgtggtttaaactaggttcagttatg 186  Q
    || | ||||||  || |||||||||||||||||| ||| |||||||    
T  41953666 gatattctcaaagtgaaaagtgtggtttaaactaagtttagttatg 41953711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 51 - 186
Target Start/End: Complemental strand, 20572336 - 20572200
Alignment:
Q  51 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagc-agtaaaaggttttagaaaatctc 149  Q
    ||||||| ||||||||  |||||||||||||| |||||||||||| ||||||||||||| | |||  ||| ||| | | ||||| | |||||||| | ||    
T  20572336 agaaaacttgtttgcaagaaaataaaataaatcatttgtcacaaccgtaaatataaaagttgaaggctggaaaaacaattaaaacgatttagaaattatc 20572237  T
Q  150 aagatggaaagtgtggtttaaactaggttcagttatg 186  Q
    ||  || |||||||||||||||||| ||| |||||||    
T  20572236 aaagtgaaaagtgtggtttaaactatgttaagttatg 20572200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 21799143 - 21799028
Alignment:
Q  69 aaaataaaataaattatttgtcacaacagtaaatataaaaggtt-aagtttggg--aaagcagtaaaaggttttagaaaatctcaagatggaaagtgtgg 165  Q
    |||||||||||||| ||||||||||| ||||||||||||| ||| ||| |||||  ||| |||| |||    ||||||| |||||||||| |||||||||    
T  21799143 aaaataaaataaatcatttgtcacaatagtaaatataaaaagttaaaggttggggaaaaacagtgaaaaagattagaaattctcaagatgaaaagtgtgg 21799044  T
Q  166 tttaaactaggttcag 181  Q
    ||||||||| ||||||    
T  21799043 tttaaactacgttcag 21799028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 186
Target Start/End: Complemental strand, 51462399 - 51462266
Alignment:
Q  53 aaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctcaag 152  Q
    ||||| |||||||| ||||||||||||||| || | |||| |||||||||||||||| | ||| |||| |||    ||||| | |||||| | ||||||     
T  51462399 aaaacttgtttgcaaaaaaataaaataaatcatctatcacgacagtaaatataaaagttaaaggttggaaaaattttaaaaagatttagatattctcaac 51462300  T
Q  153 atggaaagtgtggtttaaactaggttcagttatg 186  Q
     || |||||||||||||||||| ||||| |||||    
T  51462299 gtgaaaagtgtggtttaaactaagttcaattatg 51462266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 19940193 - 19940268
Alignment:
Q  18 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaa 94  Q
    |||||||| ||||| |||   ||||||||||| ||||||| ||||| || ||||||||||||||| |||||||||||    
T  19940193 ctgtggagctatagcttcctatagtttttcagtagaaaacttgtttaca-aaaaataaaataaatcatttgtcacaa 19940268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 5048480 - 5048590
Alignment:
Q  69 aaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggttt 168  Q
    |||||||||||||| | |||| |||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||| | ||||||||||||    
T  5048480 aaaataaaataaatcacttgttacaacagtaaatataaaaggttgagtttgggaaagcaataaaaggttttaaaaaatctcaagaggtaaagtgtggttt 5048579  T
Q  169 aaactaggttc 179  Q
    |||||||||||    
T  5048580 aaactaggttc 5048590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 40504470 - 40504623
Alignment:
Q  18 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaag-t 116  Q
    |||||||| ||||| ||||| ||| ||||||||||||||| |||||| |  |||||||||||||  ||||||||||||| ||||  |||||||||||| |    
T  40504470 ctgtggagctatagcttcgcatagcttttcagcagaaaacttgtttgtaagaaaataaaataaaacatttgtcacaacaataaaagtaaaaggttaagtt 40504569  T
Q  117 ttgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtttaa 170  Q
    |||||||| |||    ||  ||||||||||||||||||| ||||||||||||||    
T  40504570 ttgggaaaacagctgcagtctttagaaaatctcaagatgaaaagtgtggtttaa 40504623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 16254181 - 16254013
Alignment:
Q  19 tgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagttt 118  Q
    ||||||| ||||| |  |||||| |||||| | |||||| ||||||   |||||||||||||| |||||||||||||| ||||  |||||||||||||||    
T  16254181 tgtggagctatagctctgcgtagcttttcaacggaaaacttgtttggtaaaaaataaaataaaatatttgtcacaacattaaaagtaaaaggttaagttt 16254082  T
Q  119 gggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggttta-aactaggttcagttatg 186  Q
     |||| ||||| ||||  ||||||||||||||||||| ||| ||| ||||| | |||||||||| ||||    
T  16254081 cggaatgcagttaaagtctttagaaaatctcaagatgaaaattgtagtttagatctaggttcagctatg 16254013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 7229465 - 7229334
Alignment:
Q  51 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggtt-aagtttgggaaagc-agtaaaaggttttagaaaatct 148  Q
    ||||||| ||||| ||  |||||||||||||| ||||||||||||||||||||||||| ||| ||| |||||||| | | ||||| |  ||||||| |||    
T  7229465 agaaaacttgtttccaagaaaataaaataaatcatttgtcacaacagtaaatataaaaagttaaaggttgggaaaacaattaaaaagacttagaaattct 7229366  T
Q  149 caagatggaaagtgtggtttaaactaggttca 180  Q
    |||| |  |||||||||||||||||| |||||    
T  7229365 caaggtaaaaagtgtggtttaaactaagttca 7229334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 16300354 - 16300444
Alignment:
Q  69 aaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctcaagatggaaa 159  Q
    ||||| |||||||  ||||||||||||| ||||  |||||||||||||||| ||||||||| ||||  |||||||||| | ||||||||||    
T  16300354 aaaatgaaataaaacatttgtcacaacattaaaagtaaaaggttaagtttgagaaagcagttaaagtctttagaaaatttgaagatggaaa 16300444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 20176410 - 20176345
Alignment:
Q  59 tgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaa 124  Q
    ||||||||  ||||| ||| |||| |||| |||||||||||||||||||||||||| |||||||||    
T  20176410 tgtttgcaagaaaattaaaaaaatcatttatcacaacagtaaatataaaaggttaattttgggaaa 20176345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 16299584 - 16299642
Alignment:
Q  19 tgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaa 77  Q
    ||||||| || || ||||||||| ||||||||||||||| |||||| | ||||||||||    
T  16299584 tgtggagctacagcttcgcgtagcttttcagcagaaaacttgtttggagaaaaataaaa 16299642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 19589884 - 19589834
Alignment:
Q  51 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaa 101  Q
    ||||||| |||||||| ||||||| ||||||| ||||||||||||| ||||    
T  19589884 agaaaacttgtttgcaaaaaaatagaataaatcatttgtcacaacaataaa 19589834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 2475814 - 2475859
Alignment:
Q  51 agaaaacctgtttgcataaaaataaaataaattatttgtcacaaca 96  Q
    ||||||| |||||| | ||||||||||||||| |||||||||||||    
T  2475814 agaaaacttgtttgtaaaaaaataaaataaatcatttgtcacaaca 2475859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 18398133 - 18398173
Alignment:
Q  146 tctcaagatggaaagtgtggttt-aaactaggttcagttat 185  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  18398133 tctcaagatggaaattgtggtttaaaactaggttcagttat 18398173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 1e-30; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 5370869 - 5370754
Alignment:
Q  68 aaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagttt-gggaaagcagt-aaaaggttttagaaaatctcaagatggaaagtgtgg 165  Q
    ||||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||||| |||| |||| | |||||||| ||||||||||||||||||||    
T  5370869 aaaaaaaaaaaaaatcatttgtcacaacaataaatataaaaggttaagttttgggaaaacagttaaaaagatttagaaattctcaagatggaaagtgtgg 5370770  T
Q  166 tttaaactaggttcag 181  Q
    ||||||||||||||||    
T  5370769 tttaaactaggttcag 5370754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 30973063 - 30972913
Alignment:
Q  18 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtt 117  Q
    |||||||| ||| | || |||||| ||||| ||||||||| |||||| | |||||||||||| |  |||| |||||||| ||||  ||||||||||||||    
T  30973063 ctgtggagctatggctttgcgtagcttttctgcagaaaacatgtttggagaaaaataaaatataacatttttcacaacaataaaagtaaaaggttaagtt 30972964  T
Q  118 tgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggttt 168  Q
    ||||||| |||| ||||  ||||||||||||||||||| ||||||||||||    
T  30972963 tgggaaaacagttaaagtctttagaaaatctcaagatgaaaagtgtggttt 30972913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 24576813 - 24576705
Alignment:
Q  51 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagc-agtaaaaggttttagaaaatctc 149  Q
    ||||||| ||||||||  ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| | | ||||| | |||||||| ||||    
T  24576813 agaaaacttgtttgcaagaaagtaaaataaattatttgtcacaacaataaatgtaaaaggttaagtttgggaaaacaattaaaacgatttagaaattctc 24576714  T
Q  150 aagatggaa 158  Q
    |||||||||    
T  24576713 aagatggaa 24576705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 33855131 - 33855265
Alignment:
Q  53 aaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagc-agtaaaaggttttagaaaatctcaa 151  Q
    ||||| ||||||||  ||||||||| |||| |||||||||||||||||||||||||| | ||| |||||||| | | ||||| | |||||||| ||||||    
T  33855131 aaaacttgtttgcaagaaaataaaaaaaatcatttgtcacaacagtaaatataaaagttaaaggttgggaaaacaattaaaaagatttagaaattctcaa 33855230  T
Q  152 gatggaaagtgtggtttaaactaggttcagttatg 186  Q
      || |||||||||||||||||| |||| ||||||    
T  33855231 agtgaaaagtgtggtttaaactaagttcggttatg 33855265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 16341478 - 16341583
Alignment:
Q  18 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtt 117  Q
    |||||||| ||||| |||| |||| ||||| ||||||||| ||||||||  |||||| ||| ||  |||| ||||||||| ||||||||||||||| |||    
T  16341478 ctgtggagctatagcttcgtgtagcttttctgcagaaaacgtgtttgcaataaaatataattaaacatttctcacaacag-aaatataaaaggttaggtt 16341576  T
Q  118 tgggaaa 124  Q
    |||||||    
T  16341577 tgggaaa 16341583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 25894209 - 25894270
Alignment:
Q  48 agcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaag 109  Q
    |||||||||| |||||| |  |||||||||||||| |||||||||||||||||| |||||||    
T  25894209 agcagaaaacttgtttgtaagaaaataaaataaatcatttgtcacaacagtaaaaataaaag 25894270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 17270526 - 17270469
Alignment:
Q  20 gtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaa 77  Q
    |||||| ||||||||||||||| |||| ||||  |||| |||||||||||||||||||    
T  17270526 gtggagctatagtttcgcgtagctttttagcatgaaacttgtttgcataaaaataaaa 17270469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 13232016 - 13232118
Alignment:
Q  18 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtt 117  Q
    |||||||| ||||||| ||||||| | ||||  ||||||  | |||| || |||||||| ||||| ||||| ||  | | ||||||||||||||||||||    
T  13232016 ctgtggagctatagttccgcgtagctcttcaatagaaaatttatttgaatgaaaataaagtaaatcatttggcattataataaatataaaaggttaagtt 13232115  T
Q  118 tgg 120  Q
    |||    
T  13232116 tgg 13232118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 38 - 186
Target Start/End: Original strand, 21671024 - 21671172
Alignment:
Q  38 gtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagta-aaaggt 136  Q
    |||| ||||||||| ||||| |||||| |  |||||||||||||| ||||||| ||||| ||||| ||||| |||||||| |||||| ||||  ||| |     
T  21671024 gtagcttttcagcataaaacttgtttgtaagaaaataaaataaatcatttgtcccaacaataaatctaaaaagttaagtt-gggaaaacagtttaaaaga 21671122  T
Q  137 tttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttatg 186  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  21671123 tttagaaattctcaagatggaaagtgtggtttaaactaagttcagttatg 21671172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 186
Target Start/End: Original strand, 21678440 - 21678588
Alignment:
Q  38 gtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagta-aaaggt 136  Q
    |||| ||||||||| ||||| |||||| |  |||||||||||||| ||||||| ||||| ||||| ||||| |||||||| || ||| ||||  ||| |     
T  21678440 gtagcttttcagcataaaacttgtttgtaagaaaataaaataaatcatttgtcccaacaataaatctaaaaagttaagtt-ggaaaaacagtttaaaaga 21678538  T
Q  137 tttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttatg 186  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  21678539 tttagaaattctcaagatggaaagtgtggtttaaactaagttcagttatg 21678588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 51 - 178
Target Start/End: Original strand, 24884282 - 24884409
Alignment:
Q  51 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctca 150  Q
    ||||||| | |||| | ||||||||||||||| ||||||||||||| ||||  |||||| |||||||| |||||||||| ||||  ||||||||||||||    
T  24884282 agaaaacttatttggagaaaaataaaataaataatttgtcacaacaataaaagtaaaag-ttaagtttaggaaagcagttaaagtctttagaaaatctca 24884380  T
Q  151 agatggaaagtgtggttta-aactaggtt 178  Q
    ||||||||  ||||||||| |||||||||    
T  24884381 agatggaagatgtggtttagaactaggtt 24884409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 13808125 - 13808256
Alignment:
Q  43 ttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaa-tataaaaggttaagtttgggaaagcag-taaaaggtttta 140  Q
    ||||||| ||||||| ||||||||  |||||||||||||| ||||||||||||| |||| |||||||| ||||||||||||||  || ||||| | | ||    
T  13808125 ttttcagtagaaaacttgtttgcaacaaaataaaataaatcatttgtcacaacactaaagtataaaagtttaagtttgggaaaatagttaaaatgatcta 13808224  T
Q  141 gaaaatctcaagatggaaagtgtggtttaaac 172  Q
    |||| |||||| |||||||| |||||||||||    
T  13808225 gaaattctcaacatggaaagcgtggtttaaac 13808256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 16511929 - 16511852
Alignment:
Q  54 aaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaa--gtttgggaaagcagt 129  Q
    |||| ||||||||  |||||||||||||| ||||||||||||| |||| |||||| |||||  |||||||||| ||||    
T  16511929 aaacttgtttgcaagaaaataaaataaatcatttgtcacaacaataaaaataaaaagttaaaggtttgggaaaacagt 16511852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 15257383 - 15257488
Alignment:
Q  45 ttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaa 144  Q
    ||||||||||||| | |||| | ||||||||||||||  |||||||||| |||||||  ||||| ||||||||||| |||| ||| ||||  ||||||||    
T  15257383 ttcagcagaaaacttatttggaaaaaaataaaataaaacatttgtcaca-cagtaaaagtaaaaagttaagtttggcaaagtagttaaagtctttagaaa 15257481  T
Q  145 atctcaa 151  Q
    |||||||    
T  15257482 atctcaa 15257488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 25234526 - 25234454
Alignment:
Q  42 tttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaa 114  Q
    |||| ||| ||||||| ||||||||  |||||||||||||| |||| | |||||| |||||||||||||||||    
T  25234526 ttttccagtagaaaacttgtttgcaagaaaataaaataaatcattttttacaacaataaatataaaaggttaa 25234454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 19882278 - 19882409
Alignment:
Q  51 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagt-aaaaggttttagaaaatctc 149  Q
    ||||||| | ||||||  || ||||| ||||| ||||||||||||||||||     ||||||||||||||| |  || | |||| | |||| ||| ||||    
T  19882278 agaaaacttatttgcaagaatataaagtaaatcatttgtcacaacagtaaa-----aaggttaagtttggggatacaattaaaaagatttataaattctc 19882372  T
Q  150 aagatggaaagtgtggtttaaactaggttcagttatg 186  Q
    |||| ||||| | |||||||||||||||| |||||||    
T  19882373 aagacggaaaatatggtttaaactaggtttagttatg 19882409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 15245117 - 15245068
Alignment:
Q  47 cagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaaca 96  Q
    ||||||||||| ||||||||  |||||||||||||| |||||||| ||||    
T  15245117 cagcagaaaacttgtttgcaagaaaataaaataaatcatttgtcataaca 15245068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 33079618 - 33079573
Alignment:
Q  51 agaaaacctgtttgcataaaaataaaataaattatttgtcacaaca 96  Q
    ||||||| ||||||||  | ||||||||||||||||||||||||||    
T  33079618 agaaaacttgtttgcaagagaataaaataaattatttgtcacaaca 33079573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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