View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9758_low_5 (Length: 454)
Name: NF9758_low_5
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 44001936 - 44001730
Alignment:
| Q |
18 |
agttcctataaatactctcatttaccaccatttcatttcaaaataacctcaaccatcatatataattttctatctcacttaaacttccaaacccaataca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44001936 |
agttcctataaatactctcatttaccaccatttcatttcaaaataacctcaaccatcatatataattttctatctcacttaaacttccaaacccaataca |
44001837 |
T |
|
| Q |
118 |
accatcagatcgaattcagtttcgattcgatctggtggtttgggcggtctaaataactcttaattaaggtaataaatctaaacaaatattatctcaaact |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44001836 |
accatcagatcgaattcagattcgattcgatctggtggtttgggcggtctaaataactc----ttaaggtaataaatctaaacaaatattatctcaaact |
44001741 |
T |
|
| Q |
218 |
tagactttctc |
228 |
Q |
| |
|
||||||||||| |
|
|
| T |
44001740 |
tagactttctc |
44001730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 275 - 444
Target Start/End: Complemental strand, 44001682 - 44001516
Alignment:
| Q |
275 |
ctagaagaacaactacaagaactagaacttttaacagtatcatcatcatcaagatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgatttt |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44001682 |
ctagaagaacaactacaagaactagaacttttaacagtatcatcatca---agatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgatttt |
44001586 |
T |
|
| Q |
375 |
cacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaagaacttgggattaggcctatg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44001585 |
cacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaagaacttgggattaggcctatg |
44001516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 431
Target Start/End: Original strand, 39865935 - 39866038
Alignment:
| Q |
328 |
atggacaaagtgatgaggttggcatctgaaaaaggtgtggtgattttcacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaagaac |
427 |
Q |
| |
|
||||| || |||||||||||||| | ||||| ||||||||| | ||||| ||||| || |||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
39865935 |
atggagaaggtgatgaggttggctacagaaaagggtgtggtggtattcaccaagagctcttgttgtctatgctatgcagtgaacattttgtttcaagaaa |
39866034 |
T |
|
| Q |
428 |
ttgg |
431 |
Q |
| |
|
|||| |
|
|
| T |
39866035 |
ttgg |
39866038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 431
Target Start/End: Original strand, 39861478 - 39861584
Alignment:
| Q |
325 |
aagatggacaaagtgatgaggttggcatctgaaaaaggtgtggtgattttcacaaagagttcatgttgtctatgctatgcagttaacattctgtttcaag |
424 |
Q |
| |
|
|||||||| || |||||||||||||| | ||||| ||||| ||||||||||| ||||| || |||||| | ||||||||||| |||||| ||||||||| |
|
|
| T |
39861478 |
aagatggagaaggtgatgaggttggctacagaaaagggtgttgtgattttcaccaagagctcttgttgtttgtgctatgcagtgaacattttgtttcaag |
39861577 |
T |
|
| Q |
425 |
aacttgg |
431 |
Q |
| |
|
|| |||| |
|
|
| T |
39861578 |
aaattgg |
39861584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University