View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9758_low_7 (Length: 428)
Name: NF9758_low_7
Description: NF9758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9758_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 46621444 - 46621843
Alignment:
| Q |
18 |
gaactaaagaaagtagtgatgaggatgtaatttccatggctgatgaatatttgactctgctattttgtgatatccaagacatatcaggttgattggtttt |
117 |
Q |
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| T |
46621444 |
gaactaaagaaagtagtgatgaggatgtaatttccatggctgatgaatatttgactctgctattttgtgatatccaagacatatcaggttgattggtttt |
46621543 |
T |
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| Q |
118 |
accatgagaagctacagtttcacactat--ctagtctggactcctttatgtaacttatgttttgccacctcaatctagattctggttacaacggaattac |
215 |
Q |
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| T |
46621544 |
accatgagaagctacagtttcacactatatctagtctggactcctttatgtaacttatgttttgccacctcaatctagattctggttacaacggaattac |
46621643 |
T |
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| Q |
216 |
catgttatttgtccgctttattattgcacttaattgtatatctattcttgttatttaggtttaatacaaagtcttacaattccttatagttttgtttttc |
315 |
Q |
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| T |
46621644 |
catgttatttgtccgctttattattgcacttaattgtatatctattcttgttatttaggtttaatacaaagtcttacaattccttatagttttgtttttc |
46621743 |
T |
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| Q |
316 |
cgtatatgtggaaacatcttttttgtataatatttatacgattatactattattatatacaaataatcttatccttgttatgtgtctccaaatgaggtct |
415 |
Q |
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| T |
46621744 |
cgtatatgtggaaacatcttatttgtataatatttatacgattatactattattatatacaaataatcttatccttgatatgtgtctccaaatgaggtct |
46621843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 46640166 - 46640252
Alignment:
| Q |
18 |
gaactaaagaaagtagtgatgaggatgtaatttccatggctgatgaatat--ttgactctgctattttgtgatatccaagacatatca |
103 |
Q |
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| T |
46640166 |
gaactaaagaaagtagtgatgaggatgtaatttccatagccgatgaatattgttgtctcttctatttggtgata-ccaagacatatca |
46640252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 342
Target Start/End: Original strand, 46640764 - 46640822
Alignment:
| Q |
284 |
aagtcttacaattccttatagttttgtttttccgtatatgtggaaacatcttttttgta |
342 |
Q |
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| T |
46640764 |
aagtcttgcaattccttacggttttgtttttacgtatgtgtgaaaacatcttatttgta |
46640822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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