View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9759_high_4 (Length: 295)
Name: NF9759_high_4
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 35655866 - 35655612
Alignment:
| Q |
18 |
acttagaaggtgtaacacactgagactccttacttgtctccaatactcaccatatgcacaacttgccacatctttggaactgaataaaaggatatcaaag |
117 |
Q |
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| T |
35655866 |
acttagaaggtgtaacacactgagactccttacttgtctccaatactcaccatatgcacaacttgccacatctttggaactgaataaaaggatatcaaag |
35655767 |
T |
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| Q |
118 |
attttaagttgtggcctatcacagaagactaagtcatgagttttcattacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35655766 |
attttaagttgtggcctatcacagaagactaagtcatgagttttcattacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaa |
35655667 |
T |
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| Q |
218 |
aataaagaagcattaaagggccatatttgtgagctaaatcttggagtgatctgtg |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35655666 |
aataaagaagcattaaagggccatatttgtgagctaaatcttggagtgatctgtg |
35655612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 24 - 272
Target Start/End: Complemental strand, 35641524 - 35641276
Alignment:
| Q |
24 |
aaggtgtaacacactgagactccttacttgtctccaatactcaccatatgcacaacttgccacatctttggaactgaataaaaggatatcaaagatttta |
123 |
Q |
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| T |
35641524 |
aaggtgtaacacactaagactccttacttgtctccaatactcaccatatgcacaacttgctacacctttggaaccatacaacatgatatcaaagatttta |
35641425 |
T |
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| Q |
124 |
agttgtggcctatcacagaagactaagtcatgagttttcattacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaa |
223 |
Q |
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| T |
35641424 |
cgttgtggcctatcagagaagatcaagtcatgagttttcattacctgacttgctgcatcagctgaggaaactacaaccactggtaccttccctaaataaa |
35641325 |
T |
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| Q |
224 |
gaagcattaaagggccatatttgtgagctaaatcttggagtgatctgtg |
272 |
Q |
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||||||||| ||| ||||| ||||||||||||||||||||||||||||| |
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| T |
35641324 |
gaagcattagaggaccatacttgtgagctaaatcttggagtgatctgtg |
35641276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 22 - 265
Target Start/End: Complemental strand, 35676942 - 35676699
Alignment:
| Q |
22 |
agaaggtgtaacacactgagactccttacttgtctccaatactcaccatatgcacaacttgccacatctttggaactgaataaaaggatatcaaagattt |
121 |
Q |
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||||||| ||| ||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||||||||| |
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| T |
35676942 |
agaaggtttaatacactgagacttcttacttgtttccaatactcaccatatccacaacttgccacatctttggaaccgtagaaaaggatatcaaagattt |
35676843 |
T |
|
| Q |
122 |
taagttgtggcctatcacagaagactaagtcatgagttttcattacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaata |
221 |
Q |
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|| | |||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||| || || ||||| |||||||| |
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| T |
35676842 |
tacgatgtggcctatcagcgaagaccgagtcatgagttttcattacttctcttgctgcatcagcagaggaaactacaaccaccggtaccttaccaaaata |
35676743 |
T |
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| Q |
222 |
aagaagcattaaagggccatatttgtgagctaaatcttggagtg |
265 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35676742 |
aagaagcattaaagggccatatttgtgagctaaattttggagtg |
35676699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 27 - 255
Target Start/End: Complemental strand, 35646441 - 35646213
Alignment:
| Q |
27 |
gtgtaacacactgagactccttacttgtctccaatactcaccatatgcacaacttgccacatctttggaactgaataaaaggatatcaaagattttaagt |
126 |
Q |
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|||||||| ||| |||||||||| ||| |||||||| ||||||||| ||||||| |||| ||||||||||| ||||||| || ||| |||||| | |
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| T |
35646441 |
gtgtaacaaacttagactccttaattgcctccaatattcaccatatccacaactagccatatctttggaaccatataaaagtatgtcattcattttacga |
35646342 |
T |
|
| Q |
127 |
tgtggcctatcacagaagactaagtcatgagttttcattacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaa |
226 |
Q |
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| ||| |||||| |||| || || |||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
35646341 |
tatggtctatcagagaaaaccaaatcatgagttttcattacttttcttgctgtatcagcagaggaaattacaagtactggaaccttcccaaaataaagaa |
35646242 |
T |
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| Q |
227 |
gcattaaagggccatatttgtgagctaaa |
255 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
35646241 |
gcattaaagggccatatttgtgagataaa |
35646213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 265
Target Start/End: Complemental strand, 35673466 - 35673244
Alignment:
| Q |
47 |
ttacttgtctccaatactcaccatatgcacaacttgccacatctttggaact--gaat-----aaaaggatatcaaagattttaagttgtggcctatcac |
139 |
Q |
| |
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||||||||||||| |||||||||| |||||||||||| |||| ||||||| | ||| || | |||||||| ||||||| |||||| |||||| |
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| T |
35673466 |
ttacttgtctccattactcaccatttgcacaacttgctacatatttggaagttggaaccatacaatatgatatcaaggattttattttgtggtctatcag |
35673367 |
T |
|
| Q |
140 |
agaagactaagtcatgagttttcatta---cttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaagcattaaagg |
236 |
Q |
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|||| | |||||||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
35673366 |
agaaaagcaagtcatggattttcattattacttttcttgctgcatcagc-----aaac-acaagtactggaaccttcccaaaataaagaagcactaaagg |
35673273 |
T |
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| Q |
237 |
gccatatttgtgagctaaatcttggagtg |
265 |
Q |
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||||| |||||||||| |||||| ||||| |
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| T |
35673272 |
gccatttttgtgagctgaatcttagagtg |
35673244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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