View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9759_high_5 (Length: 268)
Name: NF9759_high_5
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 26536428 - 26536186
Alignment:
| Q |
11 |
cacagaccaattttatgacctcacaaaacagtcaaatcattcataacctgaattttcaagacaatgaattagcttccattnnnnnnncatcacatgcaga |
110 |
Q |
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| T |
26536428 |
cacagaccaattttatgacctcacaaaacagtcaaatcattcataacctgaattttcaagacaatgaattagcttccattaaaaaaacatcacatgcaga |
26536329 |
T |
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| Q |
111 |
tgcagatagaaacgatcaaaaccagatcacaactacctaacatatacatgc-nnnnnnnnnnnncataatcatgttcttaatcttacctaacacacataa |
209 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26536328 |
tgcagatagaaacaatcaaaaccagatcacaactacctaacatatacatgcaaaaaaaaaaaagcataatcatgttcttaatcttacctaacacacataa |
26536229 |
T |
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| Q |
210 |
atcactactaaatcatcaaattcgcattagttaattgtgtttt |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26536228 |
atcactactaaatcatcaaattcgcattagttaattgtgtttt |
26536186 |
T |
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