View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9759_high_9 (Length: 236)

Name: NF9759_high_9
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9759_high_9
NF9759_high_9
[»] chr7 (8 HSPs)
chr7 (1-222)||(25542128-25542349)
chr7 (1-70)||(1049744-1049814)
chr7 (1-69)||(35379-35448)
chr7 (1-69)||(44314-44383)
chr7 (1-69)||(3878322-3878391)
chr7 (1-69)||(18567363-18567432)
chr7 (1-69)||(31435517-31435586)
chr7 (3-69)||(1047436-1047503)
[»] chr6 (9 HSPs)
chr6 (74-222)||(11980422-11980568)
chr6 (1-73)||(8995251-8995324)
chr6 (1-73)||(9019698-9019771)
chr6 (1-70)||(15530592-15530662)
chr6 (7-69)||(19227885-19227948)
chr6 (1-71)||(1072326-1072397)
chr6 (1-69)||(32279794-32279862)
chr6 (131-199)||(11980772-11980840)
chr6 (3-69)||(14507649-14507716)
[»] chr4 (20 HSPs)
chr4 (1-69)||(31850069-31850138)
chr4 (3-69)||(22044863-22044930)
chr4 (1-69)||(9148054-9148123)
chr4 (1-66)||(5198217-5198283)
chr4 (3-69)||(22048508-22048575)
chr4 (1-69)||(36920057-36920125)
chr4 (1-69)||(48486113-48486182)
chr4 (3-69)||(5637939-5638006)
chr4 (3-69)||(7941133-7941200)
chr4 (1-65)||(24888594-24888659)
chr4 (1-70)||(36921965-36922034)
chr4 (1-69)||(38408993-38409062)
chr4 (3-70)||(22783250-22783318)
chr4 (3-69)||(11434769-11434836)
chr4 (3-69)||(16932293-16932360)
chr4 (3-69)||(22780885-22780952)
chr4 (3-69)||(9174618-9174684)
chr4 (1-69)||(3825043-3825112)
chr4 (3-70)||(16934647-16934715)
chr4 (1-64)||(52942938-52943002)
[»] chr3 (17 HSPs)
chr3 (2-69)||(1321161-1321229)
chr3 (3-69)||(11162891-11162958)
chr3 (3-69)||(11170145-11170212)
chr3 (1-69)||(5523083-5523152)
chr3 (1-69)||(26720268-26720337)
chr3 (1-69)||(24176999-24177068)
chr3 (3-74)||(53896687-53896759)
chr3 (1-69)||(32218836-32218905)
chr3 (1-69)||(48362117-48362186)
chr3 (3-71)||(50493674-50493743)
chr3 (1-68)||(5191374-5191442)
chr3 (1-70)||(32264512-32264581)
chr3 (1-69)||(10956495-10956563)
chr3 (1-69)||(18097353-18097422)
chr3 (1-69)||(18099638-18099707)
chr3 (3-69)||(7606896-7606963)
chr3 (3-69)||(38210067-38210134)
[»] chr5 (14 HSPs)
chr5 (3-69)||(38881845-38881912)
chr5 (1-69)||(20504383-20504452)
chr5 (1-69)||(659713-659782)
chr5 (3-69)||(31466429-31466496)
chr5 (3-69)||(34477565-34477632)
chr5 (1-70)||(18186518-18186588)
chr5 (1-65)||(4236374-4236439)
chr5 (1-69)||(16775897-16775966)
chr5 (1-69)||(20507932-20508001)
chr5 (1-69)||(21947770-21947839)
chr5 (3-69)||(34479905-34479972)
chr5 (6-69)||(21684905-21684969)
chr5 (1-69)||(12556372-12556441)
chr5 (3-71)||(25921925-25921994)
[»] chr8 (8 HSPs)
chr8 (1-71)||(4423833-4423904)
chr8 (3-69)||(27826782-27826849)
chr8 (3-69)||(27829093-27829160)
chr8 (1-71)||(12517496-12517567)
chr8 (1-65)||(28252057-28252122)
chr8 (1-69)||(15072506-15072575)
chr8 (3-69)||(18810483-18810550)
chr8 (1-69)||(15067777-15067846)
[»] chr2 (8 HSPs)
chr2 (4-69)||(42064231-42064297)
chr2 (1-69)||(21521165-21521234)
chr2 (1-69)||(40032517-40032586)
chr2 (1-66)||(6259285-6259351)
chr2 (1-69)||(18800750-18800819)
chr2 (3-69)||(24162685-24162752)
chr2 (1-69)||(22407879-22407948)
chr2 (1-64)||(6264594-6264658)
[»] chr1 (18 HSPs)
chr1 (1-70)||(15823285-15823355)
chr1 (1-69)||(28840418-28840487)
chr1 (1-69)||(10400300-10400369)
chr1 (3-69)||(6822775-6822842)
chr1 (1-67)||(38925929-38925996)
chr1 (1-69)||(3580090-3580159)
chr1 (1-69)||(28842233-28842302)
chr1 (2-70)||(39462257-39462326)
chr1 (34-70)||(13461357-13461393)
chr1 (7-69)||(13761577-13761640)
chr1 (3-69)||(14098443-14098510)
chr1 (3-69)||(47179428-47179495)
chr1 (3-69)||(51749778-51749845)
chr1 (3-69)||(51752104-51752171)
chr1 (1-69)||(47451405-47451474)
chr1 (1-69)||(49687301-49687370)
chr1 (5-72)||(20291277-20291345)
chr1 (23-70)||(41646680-41646728)
[»] scaffold0250 (1 HSPs)
scaffold0250 (1-69)||(2629-2698)
[»] scaffold0131 (1 HSPs)
scaffold0131 (3-68)||(14768-14835)
[»] scaffold0068 (1 HSPs)
scaffold0068 (6-69)||(28941-29005)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-65)||(69764-69829)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 25542349 - 25542128
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccacattcctgcagatcttgattttaagttaactctcacataaagaaatgaaataattgtacgtaatcata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25542349 caatcgtgccacgttgcccagcaatcgtgccacattcctgcagatcttgattttaagttaactctcacatgaagaaatgaaataattgtacgtaatcata 25542250  T
Q  101 tctcagcgtcgcgttagttacatcagaaacgccttcaaactgaggtattggtgctagatagattttctctgttgatgaaattctatggtttgaatattga 200  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25542249 tcttagcgtcgcgttagttacatcagaagcgccttcaaactgaggtattggtgctagatagattttctctgttgatgaaattctatggtttgaatattga 25542150  T
Q  201 tttgtgtagttcatgatataat 222  Q
    ||||||||||||||||||||||    
T  25542149 tttgtgtagttcatgatataat 25542128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 1049744 - 1049814
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcacat 70  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1049744 caatcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttgattttaagttaactctcacat 1049814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 35448 - 35379
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35448 caatcgtgccacgttgcctagcaatcgtgccacgattcctgcagatcttgattttaagttaactctcaca 35379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 44383 - 44314
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44383 caatcgtgccacattgcccagaaatcgtgccacgattcctgcagatcttgattttaagttaactctcaca 44314  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 3878391 - 3878322
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tgattttaagttaactctcaca 69  Q
    |||||||||||||||||||||| ||||||||||  | |||||||  | ||||||||||||||||||||||    
T  3878391 caatcgtgccacgttgcccagccatcgtgccacgattctgcagaaatctgattttaagttaactctcaca 3878322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 18567432 - 18567363
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||| ||||||||| |||||||||| ||| ||| ||| | ||||||||||| ||||||||||    
T  18567432 caatcgtgccactttgcccagctatcgtgccacgatttctgtagaacctgattttaagtcaactctcaca 18567363  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31435517 - 31435586
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||| ||||||||| |||||||||| ||| ||| ||| | ||||||||||| ||||||||||    
T  31435517 caatcgtgccactttgcccagctatcgtgccacgatttctgtagaacctgattttaagtcaactctcaca 31435586  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 1047436 - 1047503
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    ||||||||||||||||||||  |||||||||  | |||||| | | ||||||||||||||||||||||    
T  1047436 atcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 1047503  T

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Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 11980568 - 11980422
Alignment:
Q  74 gaaatgaaataattgtacgtaatcatatctcagcgtcgcgttagttacatcagaaacgccttcaaactgaggtattggtgctagatagattttctctgtt 173  Q
    ||||||||||||||| || ||| ||| ||| ||  ||| ||||||||||||||| || ||||||| |||||||||||||||||||||||||||| | |||    
T  11980568 gaaatgaaataattgaacataaccatgtcttag--tcgtgttagttacatcagacacaccttcaatctgaggtattggtgctagatagattttcaccgtt 11980471  T
Q  174 gatgaaattctatggtttgaatattgatttgtgtagttcatgatataat 222  Q
    ||||||||||||| |||||||||||| ||| ||||||| ||||| ||||    
T  11980470 gatgaaattctatagtttgaatattggtttctgtagtttatgatgtaat 11980422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 8995324 - 8995251
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcacataaa 73  Q
    |||||||||||||||||||||| |||||||||| |||||| |||||| ||||||||||||||||||||||||||    
T  8995324 caatcgtgccacgttgcccagccatcgtgccacgattcctacagatcctgattttaagttaactctcacataaa 8995251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 9019771 - 9019698
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcacataaa 73  Q
    |||||||||||||||||||||| |||||||||| |||||| |||||| ||||||||||||||||||||||||||    
T  9019771 caatcgtgccacgttgcccagccatcgtgccacgattcctacagatcctgattttaagttaactctcacataaa 9019698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 15530592 - 15530662
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcacat 70  Q
    |||| |||||||||| |||||| |||||||||| ||||||||||||| |||||||||||||||||||||||    
T  15530592 caattgtgccacgttacccagccatcgtgccacgattcctgcagatcctgattttaagttaactctcacat 15530662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 19227885 - 19227948
Alignment:
Q  7 tgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||||| | |||||||||| ||||||||||||||| ||||||||||||||||||||    
T  19227885 tgccacgttgcccaaccatcgtgccacgattcctgcagatcttaattttaagttaactctcaca 19227948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 1072326 - 1072397
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcacata 71  Q
    |||||||||||||||||||| | ||||| |||| ||| ||||||| | ||||||||||||||||||||||||    
T  1072326 caatcgtgccacgttgcccaaccatcgtaccacgatttctgcagaacctgattttaagttaactctcacata 1072397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 32279862 - 32279794
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||| |||||||| |||  |||||||||| | ||||||||||||||||||||||    
T  32279862 caatcgtgccacgttgcccaacaatcgtgtcacgtttcctgcagaac-tgattttaagttaactctcaca 32279794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 11980840 - 11980772
Alignment:
Q  131 gccttcaaactgaggtattggtgctagatagattttctctgttgatgaaattctatggtttgaatattg 199  Q
    |||||||| ||||||||||||||||| |||||||||  | |||||||| | ||||| ||||||||||||    
T  11980840 gccttcaatctgaggtattggtgctacatagattttgaccgttgatgagaatctatagtttgaatattg 11980772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 14507649 - 14507716
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tgattttaagttaactctcaca 69  Q
    |||||||||||||||||||| ||||||||||  | |||||||  | ||||||||||||||||||||||    
T  14507649 atcgtgccacgttgcccagccatcgtgccacgattctgcagaaatctgattttaagttaactctcaca 14507716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31850069 - 31850138
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccaca-ttcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31850069 caatcgtgccacgttgcccagcaatcgtgccacaattcctgcagatcttgattttaagttaactctcaca 31850138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 22044863 - 22044930
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22044863 atcgtgccacgttgcccttcaatcgtgccacgattcctgcagatcttgattttaagttaactctcaca 22044930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 9148123 - 9148054
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||| ||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||    
T  9148123 caatcgcgccacgttgcccagcaatcgtaccacgattcctgaagatcttgattttaagttaactctcaca 9148054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5198283 - 5198217
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctc 66  Q
    |||||||||||||||||||||||||| || ||  |||||||||||||||||||||||||||||||||    
T  5198283 caatcgtgccacgttgcccagcaatcatgtcatgattcctgcagatcttgattttaagttaactctc 5198217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 22048508 - 22048575
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||  |||||||||||| |||| ||| |||||||||||||||||||||||||||    
T  22048508 atcgtgccacgttgcccttcaatcgtgccacgattcttgcggatcttgattttaagttaactctcaca 22048575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 36920057 - 36920125
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccacattcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||||| ||||||||||  |  |||||| | ||||||||||||||||||||||    
T  36920057 caatcgtgccacgttgcccagccatcgtgccacgattttgcagaacctgattttaagttaactctcaca 36920125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 48486182 - 48486113
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    ||||||||||||||||| |||| |||||||||| ||| ||||||  | ||||||||||||||||||||||    
T  48486182 caatcgtgccacgttgctcagccatcgtgccacgatttctgcaggacctgattttaagttaactctcaca 48486113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 5637939 - 5638006
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccac-attcctgcag-atcttgattttaagttaactctcaca 69  Q
    ||||||||||||||||||||||||||||||| ||||| |||| | | ||||||||||||||||||||||    
T  5637939 atcgtgccacgttgcccagcaatcgtgccacgattcc-gcagaaacctgattttaagttaactctcaca 5638006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 7941200 - 7941133
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||| ||||||||||  | |||||| | | ||||||||||||||||||||||    
T  7941200 atcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 7941133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24888659 - 24888594
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tgattttaagttaactct 65  Q
    |||||||||||||||||| ||| ||||||||||| | |||||||  | ||||||||||||||||||    
T  24888659 caatcgtgccacgttgcctagccatcgtgccacaattctgcagaaatctgattttaagttaactct 24888594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 36921965 - 36922034
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccacattcctgcagatcttgattttaagttaactctcacat 70  Q
    ||||||||||| |||||||||| ||||| ||||  |  |||||| | |||||||||||||||||||||||    
T  36921965 caatcgtgccatgttgcccagccatcgtaccacgattttgcagaacctgattttaagttaactctcacat 36922034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 38409062 - 38408993
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tgattttaagttaactctcaca 69  Q
    ||||||||||||| |||||||||||||||||||  | |||||||  | | ||||||||||||||||||||    
T  38409062 caatcgtgccacgatgcccagcaatcgtgccacgattctgcagaaatctaattttaagttaactctcaca 38408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 22783250 - 22783318
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcacat 70  Q
    |||||||||||||||||||| ||||| ||||  | |||||| | | |||||||||||||||||||||||    
T  22783250 atcgtgccacgttgcccagctatcgtaccacgattctgcagaaacctgattttaagttaactctcacat 22783318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 11434836 - 11434769
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||| ||||| ||||  | |||||| | | ||||||||||||||||||||||    
T  11434836 atcgtgccacgttgcccagccatcgtaccacgattctgcagaaacctgattttaagttaactctcaca 11434769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 16932293 - 16932360
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    ||||||||||||||||||||  |||||||||  | |||||| | | ||||||||||||||||||||||    
T  16932293 atcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 16932360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 22780885 - 22780952
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||| ||||| ||||  | |||||| | | ||||||||||||||||||||||    
T  22780885 atcgtgccacgttgcccagctatcgtaccacgattctgcagaaacctgattttaagttaactctcaca 22780952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 9174618 - 9174684
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcagatcttgattttaagttaactctcaca 69  Q
    ||||||| |||||||| |||  |||||||||  | ||||||| | ||||||||||||||||||||||    
T  9174618 atcgtgctacgttgcctagccgtcgtgccacgattctgcagaacctgattttaagttaactctcaca 9174684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 3825043 - 3825112
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccacattcctgcagat-cttgattttaagttaactctcaca 69  Q
    ||||||||||| |||||||||| |||||| |||  | |||||||  | ||||||||||||||||||||||    
T  3825043 caatcgtgccatgttgcccagccatcgtgtcacgattctgcagaaacctgattttaagttaactctcaca 3825112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 16934647 - 16934715
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcagat-cttgattttaagttaactctcacat 70  Q
    ||||||||| ||||||||||  |||||||||  | |||||||  | |||||||||||||||||||||||    
T  16934647 atcgtgccatgttgcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcacat 16934715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 52942938 - 52943002
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactc 64  Q
    |||||||||||||||||||| | |||||||||| |||  |||| | | |||||||||||||||||    
T  52942938 caatcgtgccacgttgcccaaccatcgtgccacgatttttgcaaaacctgattttaagttaactc 52943002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 1321229 - 1321161
Alignment:
Q  2 aatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1321229 aatcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttgattttaagttaactctcaca 1321161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 11162958 - 11162891
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11162958 atcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttgattttaagttaactctcaca 11162891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 11170212 - 11170145
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  11170212 atcgtgccacgttgcccagcaaccgtgccacgattcctgcagatcttgattttaagttaactctcaca 11170145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 5523083 - 5523152
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    ||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||    
T  5523083 caatcgtgccatgttgcccagcaatcttgccacgattcctccagatcttgattttaagttaactctcaca 5523152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 26720337 - 26720268
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    ||||| ||||||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  26720337 caatcctgccacgttgctcagccatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 26720268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 24177068 - 24176999
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    ||||||||||||||||||| |||| |||||||| ||| || |||| ||||||||||||||||||||||||    
T  24177068 caatcgtgccacgttgccctgcaaacgtgccacgatttctccagaacttgattttaagttaactctcaca 24176999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 53896687 - 53896759
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcacataaag 74  Q
    |||||||||||||||||||||||||||||||  | |||||| | | |||||||||||||||||||||| ||||    
T  53896687 atcgtgccacgttgcccagcaatcgtgccacgattctgcagaaacctgattttaagttaactctcacacaaag 53896759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 32218905 - 32218836
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    ||||||||||||||||||||   |||||||||| ||| ||||||| | ||||||||||||||||||||||    
T  32218905 caatcgtgccacgttgcccaatcatcgtgccacgatttctgcagaacctgattttaagttaactctcaca 32218836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 48362117 - 48362186
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||| | |||||||||| ||| || |||| | ||||||||||||||||||||||    
T  48362117 caatcgtgccacgttgcccaaccatcgtgccacgatttctacagaacctgattttaagttaactctcaca 48362186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 50493743 - 50493674
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcacata 71  Q
    |||||||||||||||||||| ||||||||||  | |||||| | | ||||||||||||||||||||||||    
T  50493743 atcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacata 50493674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 5191442 - 5191374
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tgattttaagttaactctcac 68  Q
    ||||||||||||| |||||||||||||||||||  | |||||||  | |||||||||||||||||||||    
T  5191442 caatcgtgccacgatgcccagcaatcgtgccacgattctgcagaaatctgattttaagttaactctcac 5191374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 32264512 - 32264581
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcacat 70  Q
    ||||||||||||||| |||||| |||||||||| ||| ||||| | | |||||||||||||||||||||||    
T  32264512 caatcgtgccacgtt-cccagccatcgtgccacgatttctgcaaaacctgattttaagttaactctcacat 32264581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 10956495 - 10956563
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    ||||||||||| | || ||||| || ||||||| ||||||||||||| ||||||||||||||||||||||    
T  10956495 caatcgtgccatgatgtccagccat-gtgccacgattcctgcagatcctgattttaagttaactctcaca 10956563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 18097353 - 18097422
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||||| ||||||||||  |  ||||| | | ||||||||||||||||||||||    
T  18097353 caatcgtgccacgttgcccagccatcgtgccacgattttgcagaaacctgattttaagttaactctcaca 18097422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 18099638 - 18099707
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||||| ||||||||||  |  ||||| | | ||||||||||||||||||||||    
T  18099638 caatcgtgccacgttgcccagccatcgtgccacgattttgcagaaacctgattttaagttaactctcaca 18099707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 7606896 - 7606963
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||| |||||| |||  | |||||| | | ||||||||||||||||||||||    
T  7606896 atcgtgccacgttgcccagccatcgtgtcacgattctgcagaaacctgattttaagttaactctcaca 7606963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 38210134 - 38210067
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    ||||||||||||||||||||  |||||||||  | |||||| | | ||||||||||||||||||||||    
T  38210134 atcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 38210067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 38881912 - 38881845
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38881912 atcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttgattttaagttaactctcaca 38881845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20504383 - 20504452
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||| | ||||||||||||||||||||||    
T  20504383 caatcgtgccacgttgcccagctatcgtgccacgatttctgcagaacctgattttaagttaactctcaca 20504452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 659782 - 659713
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||| ||| |||||||||| ||| ||||||| | ||||||||||||||||||||||    
T  659782 caatcgtgccacgttgcctagccatcgtgccacgatttctgcagaacctgattttaagttaactctcaca 659713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 31466429 - 31466496
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||  |||||||||||| ||||||||| | | ||||||||||||||||||||||    
T  31466429 atcgtgccacgttgcccttcaatcgtgccacgattcctgcaaaacctgattttaagttaactctcaca 31466496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 34477565 - 34477632
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||| ||||||||||  | |||||| | ||||||||||||||||||||||||    
T  34477565 atcgtgccacgttgcccagccatcgtgccacgattctgcagaaacttgattttaagttaactctcaca 34477632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 18186518 - 18186588
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcacat 70  Q
    |||||||||||||||||||||| ||||| ||||  | |||||| | |||||||||||||||||||||||||    
T  18186518 caatcgtgccacgttgcccagccatcgtaccacgattctgcagaaacttgattttaagttaactctcacat 18186588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 4236439 - 4236374
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tgattttaagttaactct 65  Q
    |||||||||||||||||||||| ||||||||||| | |||||||  | ||||||||||||||||||    
T  4236439 caatcgtgccacgttgcccagccatcgtgccacaattctgcagaaatctgattttaagttaactct 4236374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 16775966 - 16775897
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||| |||||||||  || |||||||||| ||||||||||||| |||||||||||||| |||||||    
T  16775966 caatcgtgtcacgttgccttgccatcgtgccacgattcctgcagatcctgattttaagttaattctcaca 16775897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20507932 - 20508001
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    ||||||||| |||||||||| | |||||||||| ||| ||||||| | ||||||||||||||||||||||    
T  20507932 caatcgtgctacgttgcccaactatcgtgccacgatttctgcagaacctgattttaagttaactctcaca 20508001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21947839 - 21947770
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||| ||||||||| ||| |||||||||| ||| ||||||| | ||||||||||||||||||||||    
T  21947839 caatcgtgtcacgttgcctagccatcgtgccacgatttctgcagaacctgattttaagttaactctcaca 21947770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 34479905 - 34479972
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||| ||||||||||  | |||||| | | ||||||||||||||||||||||    
T  34479905 atcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 34479972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 21684905 - 21684969
Alignment:
Q  6 gtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    ||||||||||||||||| ||||||||||  | |||||| | | ||||||||||||||||||||||    
T  21684905 gtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 21684969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 12556372 - 12556441
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||| ||||||||||||||||| ||  |||||| ||| ||||||| | ||||||||| ||||||||||||    
T  12556372 caattgtgccacgttgcccagccattatgccacgatttctgcagaacctgattttaaattaactctcaca 12556441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 25921925 - 25921994
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcagat-cttgattttaagttaactctcacata 71  Q
    |||||||||||||| ||| | ||||||||||  | |||||||  | ||||||||||||||||||||||||    
T  25921925 atcgtgccacgttgtccaaccatcgtgccacgattctgcagaaacctgattttaagttaactctcacata 25921994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 4423904 - 4423833
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcacata 71  Q
    |||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  4423904 caattgtgccacgttgcccagcaattgtgccacgattcctgcagatcttgattttaagttaactctcacata 4423833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 27826849 - 27826782
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  27826849 atcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 27826782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 27829160 - 27829093
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  27829160 atcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 27829093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 12517496 - 12517567
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcacata 71  Q
    ||||||||||||||||||  || |||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  12517496 caatcgtgccacgttgccttgccatcgtgccacgattcctgcagatcctgattttaagttaactctcacata 12517567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28252057 - 28252122
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactct 65  Q
    ||||||| |||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||    
T  28252057 caatcgtaccacgttgcctagccatcgtgccacgattcctgcagatcctgattttaagttaactct 28252122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 15072575 - 15072506
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||| ||||||||||||| |||||| ||| |||||||||||   ||||||||||||||||||||||    
T  15072575 caatcgtgtcacgttgcccagccatcgtgtcacgattcctgcagaatctgattttaagttaactctcaca 15072506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 18810550 - 18810483
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    ||||||||||||||||||||  |||||||||  | |||||| | | ||||||||||||||||||||||    
T  18810550 atcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 18810483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 15067846 - 15067777
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    ||||||||||| |||||||||| ||| |||||| ||||||||| |   ||||||||||||||| ||||||    
T  15067846 caatcgtgccatgttgcccagccatcttgccacgattcctgcaaaatctgattttaagttaacactcaca 15067777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 42064297 - 42064231
Alignment:
Q  4 tcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42064297 tcgtaccacgttgcccagcaatcgtgccacgattcctgcagatcttgattttaagttaactctcaca 42064231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 21521165 - 21521234
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||||| |||||||||| ||||||| ||| | ||||||||||||||||||||||    
T  21521165 caatcgtgccacgttgcccagccatcgtgccacgattcctgtagaacctgattttaagttaactctcaca 21521234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 40032517 - 40032586
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||| | ||||||||||||||||||||||    
T  40032517 caatcgtgccacgttgcccagccatcgtgccacgatttctgcagaacctgattttaagttaactctcaca 40032586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6259285 - 6259351
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctc 66  Q
    |||| |||||||||||| |||| |||||||||| ||| ||||||| | |||||||||||||||||||    
T  6259285 caatagtgccacgttgcacagccatcgtgccacgatttctgcagaacctgattttaagttaactctc 6259351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 18800750 - 18800819
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||| ||||||||||| ||| |||||||| ||| || |||| | ||||||||||||||||||||||    
T  18800750 caatcgtgtcacgttgcccaacaaacgtgccacgatttctccagaacatgattttaagttaactctcaca 18800819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 24162685 - 24162752
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcagat-cttgattttaagttaactctcaca 69  Q
    |||||||||||||||||| | || |||||||  | |||||||  ||||||||||||||||||||||||    
T  24162685 atcgtgccacgttgcccaaccattgtgccacgattctgcagaaacttgattttaagttaactctcaca 24162752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 22407879 - 22407948
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    ||||||||||| ||| |||  |||||||||||| ||||||||||| | | ||||||| ||||||||||||    
T  22407879 caatcgtgccatgttacccttcaatcgtgccacgattcctgcagaacctaattttaaattaactctcaca 22407948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 6264594 - 6264658
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccaca-ttcctgcagatcttgattttaagttaactc 64  Q
    ||||| |||||||||||||| | ||||||| ||| || ||||||| | |||||||||||||||||    
T  6264594 caatcatgccacgttgcccaaccatcgtgcaacaatttctgcagaacctgattttaagttaactc 6264658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 15823355 - 15823285
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcacat 70  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||    
T  15823355 caatcgtgccacgttgcccagccatcgtgccacgattcctgcagatcctgattttaagttaactctcacat 15823285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 28840487 - 28840418
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    ||||||||||||||||||  || |||||||||| ||||||||||||| |||||||||||||||| |||||    
T  28840487 caatcgtgccacgttgccttgccatcgtgccacgattcctgcagatcctgattttaagttaactttcaca 28840418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 10400300 - 10400369
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcag-atcttgattttaagttaactctcaca 69  Q
    ||||||||||||||||||||||||||||||||| ||||| |||| | | ||||||||||||||||||||||    
T  10400300 caatcgtgccacgttgcccagcaatcgtgccacgattcc-gcagaaacctgattttaagttaactctcaca 10400369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 6822842 - 6822775
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||||| ||||||||||  | |||||| | | ||||||||||||||||||||||    
T  6822842 atcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 6822775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 38925929 - 38925996
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctca 67  Q
    |||||||||||||||||||||| ||||| |||| ||| |||| || | ||||||||||||||||||||    
T  38925929 caatcgtgccacgttgcccagccatcgtaccacgatttctgcggaacctgattttaagttaactctca 38925996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 3580090 - 3580159
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||| ||| |||||||||| ||||||||||||| ||||||||| | | ||||||||||||||||| ||||    
T  3580090 caattgtgtcacgttgccctgcaatcgtgccacgattcctgcataacctgattttaagttaactcccaca 3580159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 28842302 - 28842233
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||||| |||  || |||||||||| |||||| |||||| |||||||||||||||| |||||    
T  28842302 caatcgtgccacgtagccttgccatcgtgccacgattcctacagatcctgattttaagttaactttcaca 28842233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 39462326 - 39462257
Alignment:
Q  2 aatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcacat 70  Q
    ||||||||||||||||||| | || ||| ||| ||| ||||||| | |||||||||||||||||||||||    
T  39462326 aatcgtgccacgttgcccaaccattgtgtcacgatttctgcagaacctgattttaagttaactctcacat 39462257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 13461357 - 13461393
Alignment:
Q  34 attcctgcagatcttgattttaagttaactctcacat 70  Q
    ||||||||||||| |||||||||||||||||||||||    
T  13461357 attcctgcagatcctgattttaagttaactctcacat 13461393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 13761640 - 13761577
Alignment:
Q  7 tgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    |||||||||||||||| ||||||||||  | |||||| | | ||||||||||||||||||||||    
T  13761640 tgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 13761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 14098443 - 14098510
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    ||||||||||| ||| |||| |||||||||| ||| |||||||   ||||||||||||||||||||||    
T  14098443 atcgtgccacggtgctcagccatcgtgccacgatttctgcagaatctgattttaagttaactctcaca 14098510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 47179495 - 47179428
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    ||||||||||||||||||||  |||||||||  | |||||| | | ||||||||||||||||||||||    
T  47179495 atcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 47179428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 51749845 - 51749778
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcagat-cttgattttaagttaactctcaca 69  Q
    ||||| |||||||||||| | ||||||||||  | |||||||  ||||||||||||||||||||||||    
T  51749845 atcgtaccacgttgcccaaccatcgtgccacgattctgcagaaacttgattttaagttaactctcaca 51749778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 51752171 - 51752104
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||| | ||||||||||  | |||||| | | ||||||||||||||||||||||    
T  51752171 atcgtgccacgttgcccaaccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 51752104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 47451474 - 47451405
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||| ||||||||| |||||||||| ||| ||||| |   |||||| |||||||||||||||    
T  47451474 caatcgtgccacattgcccagccatcgtgccacgatttctgcaaaatctgatttgaagttaactctcaca 47451405  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 49687370 - 49687301
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgattttaagttaactctcaca 69  Q
    |||| ||||||||||||||||| ||| |||||| ||| || || | | ||||||||||||||||||||||    
T  49687370 caattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 49687301  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 20291345 - 20291277
Alignment:
Q  5 cgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tgattttaagttaactctcacataa 72  Q
    ||||||||||||||  || ||||||||||  | |||||||  | |||||||||||||||||||||||||    
T  20291345 cgtgccacgttgccttgccatcgtgccacgattctgcagaaatctgattttaagttaactctcacataa 20291277  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 41646728 - 41646680
Alignment:
Q  23 aatcgtgccac-attcctgcagatcttgattttaagttaactctcacat 70  Q
    ||||||||||| ||| ||||||| | |||||||||||||||||||||||    
T  41646728 aatcgtgccacgatttctgcagaacatgattttaagttaactctcacat 41646680  T

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Target: scaffold0250 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2698 - 2629
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccaca-ttcctgcagatcttgattttaagttaactctcaca 69  Q
    |||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  2698 caatcgtgccacgttgcctagcaatcgtgtcacaattcctgcagatcttgattttaagttaactctcaca 2629  T

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Target: scaffold0131 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 14835 - 14768
Alignment:
Q  3 atcgtgccacgttgcccagcaatcgtgccac-attcctgcaga-tcttgattttaagttaactctcac 68  Q
    ||||| |||||||||||  |||||||||||| ||||||||||| || |||||||||||||||||||||    
T  14835 atcgttccacgttgcccttcaatcgtgccacgattcctgcagaatcctgattttaagttaactctcac 14768  T

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Target: scaffold0068 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 29005 - 28941
Alignment:
Q  6 gtgccacgttgcccagcaatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 69  Q
    ||||||||||||||||| ||||||||||  | |||||| | | ||||||||||||||||||||||    
T  29005 gtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 28941  T

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Target: scaffold0025 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 69764 - 69829
Alignment:
Q  1 caatcgtgccacgttgcccagcaatcgtgccacattcctgcagatct-tgattttaagttaactct 65  Q
    |||||||||||||||||| ||| ||||||||||  | |||||||  | ||||||||||||||||||    
T  69764 caatcgtgccacgttgcctagccatcgtgccacgattctgcagaaatctgattttaagttaactct 69829  T

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