View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9759_low_10 (Length: 373)
Name: NF9759_low_10
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 158 - 359
Target Start/End: Complemental strand, 40835312 - 40835110
Alignment:
| Q |
158 |
ctgcctaaattatcttagtctgttccaaatataggaatattttacatcaattaggtttaacaatgaagca----taaaaacaactggatatattgattga |
253 |
Q |
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| T |
40835312 |
ctgcctaaattatcttagtctgttccaaatataggaatattttacatcaattaggtttaacaatgaagcataattaaaaacaactggatatattgattga |
40835213 |
T |
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| Q |
254 |
aatagtaataatgtgatt-atatgaaataactgtcgtgaagatggcatgagtgagtctcagacccttaataagcgaattaatttgagaacgataagtcaa |
352 |
Q |
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| T |
40835212 |
aatagtaataatgtgattaatatgaaataactgtcgtgcagatggca----tgagtctcagacccttaataagcgaattaatttgagaacgacaagtcaa |
40835117 |
T |
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| Q |
353 |
agacatc |
359 |
Q |
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| T |
40835116 |
agacatc |
40835110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 40835451 - 40835379
Alignment:
| Q |
18 |
atatcatagatcatatatatcactaacatagagtaaacaaaactgttttgactggaataaagtaaatagaaac |
90 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40835451 |
atatcatagatcatatatatcactaacatagagtaaacaaaactgttttgactggaataaagtaaatagaaac |
40835379 |
T |
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