View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9759_low_15 (Length: 286)
Name: NF9759_low_15
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 26454359 - 26454629
Alignment:
| Q |
16 |
gacatcaggcagtagctcgtattttctcaattcttcatctcttgttctatttctcatcaacaaaaggtatgtgctaactatacatcaagaaatcacttga |
115 |
Q |
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| T |
26454359 |
gacataaggcagtagctcgtattttctcaattcttcatctcttgttctatttctcatcaacaaaaggtatgtgctaactatacatcaagaaatcacttga |
26454458 |
T |
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| Q |
116 |
ttgatcttataaaaagtgtagcatgaccacgtagttgtttgttttaggtgatttgttgtggttcaaggccttgtgctttaaattactatcacaagcccaa |
215 |
Q |
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| T |
26454459 |
ttgatcttataaaaagtgtagcatgaccccatagttgtttgttttaggtgatttgttgtggttcaaggccttgtgctttaaattactatcacaagcccaa |
26454558 |
T |
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| Q |
216 |
ccattggattatttacataaatttgactaaaatgaattataacttgttagaaacactctaaaatgtctcct |
286 |
Q |
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| T |
26454559 |
ccattggattatttacataaatttgactaaaatgaattataacttgctagaaacactctaaaatgtctcct |
26454629 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 24455280 - 24455353
Alignment:
| Q |
163 |
gtgatttgttgtggttcaaggccttgtgctttaaattactatcacaagcccaaccattggattatttacataaa |
236 |
Q |
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| T |
24455280 |
gtgatttgacgtggttcaaggccttgtgcttcaaattactttcccatgaccatccattgaattagttacataaa |
24455353 |
T |
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