View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9759_low_16 (Length: 285)
Name: NF9759_low_16
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 13855207 - 13855461
Alignment:
| Q |
18 |
ctgtttacttgccattactgacgacgttgcatgtgaaatgggcggtggctgctgcaaagaaggggaagcatgtgttgcttgagaaaccggtggcggttag |
117 |
Q |
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| T |
13855207 |
ctgtttacttgccgttaccgacgacgttacatgtgaaatgggcggtggctgctgcgaagaaggggaagcatgtgttgcttgagaaaccggtggcggttag |
13855306 |
T |
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| Q |
118 |
tgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatccgagaacggaggtgatg |
217 |
Q |
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| T |
13855307 |
tgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatccgagaacggaggtgatg |
13855406 |
T |
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| Q |
218 |
aaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgtct |
272 |
Q |
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| T |
13855407 |
aaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgtct |
13855461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 13849417 - 13849669
Alignment:
| Q |
18 |
ctgtttacttgccattactgacgacgttgcatgtgaaatgggcggtggctgctgcaaagaaggggaagcatgtgttgcttgagaaaccggtggcggttag |
117 |
Q |
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| T |
13849417 |
ctgtttacgtgccgttgccgactacgttgcatgtgaaatgggcggtggctgctgcgaagaaggggaagcatgttttgttagagaagccggtggctgtgag |
13849516 |
T |
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| Q |
118 |
tgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatccgagaacggaggtgatg |
217 |
Q |
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| T |
13849517 |
tgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgtggggtgcagtttatggatgggactatgtggatgcatcatcctagaacagaggtgatg |
13849616 |
T |
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| Q |
218 |
aaggagtttttggaggatggggagaagtttggaaaggttaaatcggtatgtgt |
270 |
Q |
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| T |
13849617 |
aaggggtttttggaggatggagagaagtttggcaaggttaaatcggtatgtgt |
13849669 |
T |
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