View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9759_low_17 (Length: 282)
Name: NF9759_low_17
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 30768379 - 30768104
Alignment:
| Q |
1 |
atgttcaagatcgcctcggctacgacagaccaagcaaagcagtggattggctcatcaagaaagcaaagtcttccattgacaagctcgcggagcttcctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30768379 |
atgttcaagatcgcctcggctacgacagaccaagcaaagcagtggattggctcatcaagaaagcaaagtcttccattgacaagctcgcggagcttcctcc |
30768280 |
T |
|
| Q |
101 |
atggcatccaatcggcgaaaatcaaactctgaaacctctagaagaagttcagaatgtagttgcaaactcaagtggaatggttgttggagaaacatcagaa |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30768279 |
atggcatccaatcagcgaaaatcaaactctgaaacctctagaagaagttcagaatgtagttgcaaactcaagtggaatggttgttggagaaacatcagaa |
30768180 |
T |
|
| Q |
201 |
tctaatggttacagttttcatcttttaagacaattaagtgagaatcaaggtaaccataattcagctttcatctcac |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30768179 |
tctaatggttacagttttcatcttttaagacaattaagtgagaatcaaggtaaccataattcagctttcatttcac |
30768104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 39077353 - 39077242
Alignment:
| Q |
1 |
atgttcaagatcgcctcggctacgacagaccaagcaaagcagtggattggctcatcaagaaagcaaagtcttccattgacaagctcgcggagcttcctcc |
100 |
Q |
| |
|
|||||||||| || ||||||||||||||||| || ||||| || |||||||| ||||| || || |||||| |||||||||| || | ||||||| || |
|
|
| T |
39077353 |
atgttcaagaccgtctcggctacgacagaccgagtaaagctgttgattggcttatcaaaaaggctaagtctgccattgacaaacttgatcagcttccacc |
39077254 |
T |
|
| Q |
101 |
atggcatccaat |
112 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
39077253 |
atggaatccaat |
39077242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 22328039 - 22328097
Alignment:
| Q |
6 |
caagatcgcctcggctacgacagaccaagcaaagcagtggattggctcatcaagaaagc |
64 |
Q |
| |
|
|||||||| |||||||||||| | ||||| |||||||| ||||||||||| || ||||| |
|
|
| T |
22328039 |
caagatcgtctcggctacgaccggccaagtaaagcagtcgattggctcattaaaaaagc |
22328097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University