View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9759_low_18 (Length: 280)
Name: NF9759_low_18
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 44975333 - 44975071
Alignment:
| Q |
18 |
caagtagcactgtcatgagtgaagttccggcaatgtagtttggtgctaaagaactcaagaacagaacaaatgagtttgccataagaactatgacccaaat |
117 |
Q |
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| T |
44975333 |
caagtagcactgtcatgagtgaagttccagcaatgtagtttggtgctaaagaactcaagaacagaacaaatgagtttgccataagaactatgacccaaat |
44975234 |
T |
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| Q |
118 |
aaccaaaacaaagtaagcaaaagatagccaagaactacaaagacccactaagaagtaaactggaatagagtagataacagcaactactagcaaatatggc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44975233 |
aaccaaaacaaagtaagcaaaagatagccaagaactacaaagacccactaaaaagtaaactggaatagagtagataacagcaactactagcaaatatggc |
44975134 |
T |
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| Q |
218 |
aagaaaacaagtgtatttgctataagataagatgatagcctataaacaccacttgatgtttct |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44975133 |
aagaaaacaagtgtatttgctataagataagatgatagcctataaacaccacttgatgtttct |
44975071 |
T |
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