View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9759_low_20 (Length: 270)
Name: NF9759_low_20
Description: NF9759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9759_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 37655354 - 37655605
Alignment:
| Q |
1 |
ttatggcgagaacccatcatcatcatgattctaaaatcctcaaaatcaatcctaccatcaccatcactatcaacgcgaccaataattctttcacattcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37655354 |
ttatggcgagaacccatcatcatcatgattctaaaatcctcaaaatcaatcctaccatcaccatcactatcaacgcgaccaataattctttcacattcat |
37655453 |
T |
|
| Q |
101 |
ccaaggaacactcttgaccaatgcttctcataagcgtgttaagctccttcgctgtgatgaaaccatcgccatcaatgtcatacacagaaaacgtgctctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37655454 |
ccaaggaacactcttgaccaatgcttctcataagcgtgttaagctccttcgccgtgatgaaaccatcgccatcaatgtcatacacagaaaacgtgctctt |
37655553 |
T |
|
| Q |
201 |
taggttttctatttcctcttcagattcatagcttgttgtgcttagctcaata |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37655554 |
taggttttctatttcctcttcagattcatagcttgttgtgcttagctcaata |
37655605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 37653536 - 37653644
Alignment:
| Q |
18 |
catcatcatgattctaaaatcctcaaaatcaatcctaccatcaccatcactatcaacgcgaccaataattctttcacattcatccaaggaacactcttga |
117 |
Q |
| |
|
|||||||||||||||||| || || |||||||| || ||||||||||| | ||||||| || || |||||| |||||| ||||||| ||||||| | |
|
|
| T |
37653536 |
catcatcatgattctaaattcatcgaaatcaattctgccatcaccatcggtgtcaacgcagcctatcattcttccacatttggccaaggagcactcttca |
37653635 |
T |
|
| Q |
118 |
ccaatgctt |
126 |
Q |
| |
|
|||| |||| |
|
|
| T |
37653636 |
ccaaagctt |
37653644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 44377731 - 44377798
Alignment:
| Q |
7 |
cgagaacccatcatcatcatgattctaaaatcctcaaaatcaatcctaccatcaccatcactatcaac |
74 |
Q |
| |
|
|||||||||||||||||||| || ||||| || ||||||||||| | |||||||| || |||||||| |
|
|
| T |
44377731 |
cgagaacccatcatcatcatcatcctaaactcttcaaaatcaattgttccatcaccgtcgctatcaac |
44377798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University